| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g026570.1 |
| Family | GT5 |
| Protein Properties | Length: 910 Molecular Weight: 103110 Isoelectric Point: 6.4552 |
| Chromosome | Chromosome/Scaffold: 9 Start: 55790621 End: 55797970 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 417 | 899 | 0 |
| HIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQHNQINNLKVLDVVVKSYFEGNMFANKIWTGTVEGLPVYFIEPQHPGKFFWRAQ YYGEHDDFKRFSYFSRVALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGVAPAQDLAYCGLDVDHLDRPDRMRDNSHG RINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKVHSKKFIGILNGIDTDTWNPSTDRFLKVQYSANDLYGKSANKAALRKQLKLSSTHASQPLV GCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVQHIQREFEGIADQFQNNSNVRLLLKYDDALSHMIFAASDMFIVPSMFEPCGLTQMISMRYGSV PIVRRTGGLNDSVFDFDDETIPMELRNGFTFLKADEQGFDSALERAFNYYHRKPEVWKQLVQKDMKIDFSWDTSASQYEEIYQ | |||
| Full Sequence |
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| Protein Sequence Length: 910 Download |
| MSCSAAAGAE AAALLFRSPA PCTIAGRHRL AVSRRTPRRN LRTGVQPHQK STPSANHRNR 60 ASIQRDRAAT SIDEEQQQKS EDENELLNIQ LEDLVGMIQN TQKNILLLNQ ARLQALGRAD 120 KILKEKEALE QKINILEMKL SETGTQSVLS SEVKSDAEGL EFDVVKEENV LLKDDMNFLK 180 AKLIEITETE ESLFKLEKER ALLDASLREL ECTFISAQSD MLKLGPLQQD AWWEKVENLE 240 DLLDSTANQV EHAALTLDGY RDFPDKVEKL KASLGATNVS KFCLYLVDIL QQRLKSVEER 300 FQACSHEMHS QIELYEHSIV EFQDTLSKLI NESEKKSMEH YAEGMPSEFW SRISLLIDGW 360 SLEKKISIND ASMLREMAWK RDNRLREAYL SSRGMEEREL IENFLKMALP GTSSGLHIVH 420 IAAEMAPVAK VGGLADVISG LGKALQKKGH LVEIILPKYD CMQHNQINNL KVLDVVVKSY 480 FEGNMFANKI WTGTVEGLPV YFIEPQHPGK FFWRAQYYGE HDDFKRFSYF SRVALELLYQ 540 SGKKVDIIHC HDWQTAFVAP LYWDVYANLG FNSARICFTC HNFEYQGVAP AQDLAYCGLD 600 VDHLDRPDRM RDNSHGRINV VKGAIVYSNI VTTVSPTYAQ EVRSEGGRGL QDTLKVHSKK 660 FIGILNGIDT DTWNPSTDRF LKVQYSANDL YGKSANKAAL RKQLKLSSTH ASQPLVGCIT 720 RLVPQKGVHL IRHAIYKTAE LGGQFVLLGS SPVQHIQREF EGIADQFQNN SNVRLLLKYD 780 DALSHMIFAA SDMFIVPSMF EPCGLTQMIS MRYGSVPIVR RTGGLNDSVF DFDDETIPME 840 LRNGFTFLKA DEQGFDSALE RAFNYYHRKP EVWKQLVQKD MKIDFSWDTS ASQYEEIYQR 900 AAARARATA* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 4.0e-145 | 416 | 898 | 490 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 17 | 899 | 948 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 416 | 899 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 417 | 899 | 486 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 416 | 899 | 486 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK97773.1 | 0 | 1 | 900 | 1 | 905 | starch synthase isoform IV [Triticum aestivum] |
| GenBank | ABD64538.1 | 0 | 1 | 900 | 1 | 905 | starch synthase IV [Triticum aestivum] |
| RefSeq | NP_001056142.1 | 0 | 14 | 899 | 13 | 905 | Os05g0533600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001123590.1 | 0 | 1 | 900 | 1 | 900 | starch synthase IV [Zea mays] |
| RefSeq | XP_002440128.1 | 0 | 1 | 899 | 1 | 899 | hypothetical protein SORBIDRAFT_09g026570 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 416 | 900 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 416 | 900 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 416 | 900 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 416 | 900 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 416 | 900 | 1 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO851132 | 331 | 491 | 821 | 0 |
| CB622719 | 296 | 495 | 790 | 0 |
| JG956717 | 266 | 446 | 711 | 0 |
| JG927258 | 276 | 453 | 728 | 0 |
| FL725385 | 260 | 523 | 782 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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