| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g026690.1 |
| Family | CBM43 |
| Protein Properties | Length: 487 Molecular Weight: 53113 Isoelectric Point: 8.6969 |
| Chromosome | Chromosome/Scaffold: 9 Start: 55886299 End: 55888978 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 372 | 453 | 3.3e-23 |
| WCVFNKDTKDKYKDLPASVNYACSNADCTPLGYGASCNGLSHDGNISYAFNIYFQTMDQDVRACSFGGLAMITATNASQGGC | |||
| GH17 | 31 | 350 | 0 |
| VGVNWGTMMSHPIHPSAVVEMLRANGVDRVKLFDADPWTVAALAGSGVQAMLAAPNDQLASLARDPRRAREWVRHNVTANVNAGVDVRYVAVGNEPFLKS YNGSFINITFPALKNMQRALDEAGFGQRIKVVVPLNADIYSSPENKPVPSAGSFRKDINTLMVDIVNYLHANDAPFVVNIYPFLSLYQNPNFPLNFSFFD GATKPVFDQGMVYTNVFDANFDTLVWSLRKAGVPDMRIIVGEVGWPTDGDKNANIKYAQRFYNGFLRKVAKNIGTPLRPGRMEVYLFALIDENQKSVLPG RFERHWGLFTYDGKPKFSMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 487 Download |
| MAQRPAAAAV FVAAAVVALL LLPPSAAAAP VGVNWGTMMS HPIHPSAVVE MLRANGVDRV 60 KLFDADPWTV AALAGSGVQA MLAAPNDQLA SLARDPRRAR EWVRHNVTAN VNAGVDVRYV 120 AVGNEPFLKS YNGSFINITF PALKNMQRAL DEAGFGQRIK VVVPLNADIY SSPENKPVPS 180 AGSFRKDINT LMVDIVNYLH ANDAPFVVNI YPFLSLYQNP NFPLNFSFFD GATKPVFDQG 240 MVYTNVFDAN FDTLVWSLRK AGVPDMRIIV GEVGWPTDGD KNANIKYAQR FYNGFLRKVA 300 KNIGTPLRPG RMEVYLFALI DENQKSVLPG RFERHWGLFT YDGKPKFSMD LSGNGKGNLA 360 EIKGVQYLPS QWCVFNKDTK DKYKDLPASV NYACSNADCT PLGYGASCNG LSHDGNISYA 420 FNIYFQTMDQ DVRACSFGGL AMITATNASQ GGCLFPVQIL SASGRVVPLI FWPITLVMLV 480 SVINLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-16 | 371 | 442 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-30 | 371 | 455 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-75 | 32 | 350 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAG88662.1 | 0 | 81 | 486 | 1 | 405 | unnamed protein product [Oryza sativa Japonica Group] |
| GenBank | EEE64491.1 | 0 | 29 | 486 | 31 | 487 | hypothetical protein OsJ_19341 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056153.1 | 0 | 29 | 486 | 31 | 487 | Os05g0535100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152213.1 | 0 | 34 | 461 | 33 | 460 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
| RefSeq | XP_002440138.1 | 0 | 34 | 463 | 34 | 463 | hypothetical protein SORBIDRAFT_09g026690 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 30 | 354 | 2 | 317 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3ur8_A | 0 | 30 | 354 | 2 | 317 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3ur7_B | 0 | 30 | 354 | 2 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 30 | 354 | 2 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 30 | 354 | 2 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
