| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g027150.1 |
| Family | GH28 |
| Protein Properties | Length: 409 Molecular Weight: 43247.5 Isoelectric Point: 7.6566 |
| Chromosome | Chromosome/Scaffold: 9 Start: 56249686 End: 56252049 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 393 | 0 |
| TAACTSSEEAVLAVPAGKAYRIWPVQLSGPCKKKLKLLISGAIVAPSSPDEWAGRDPMKWLYIYGVDGLSVSGGGTIDGMGQQWWASTCKRKKTQPCYSG PRPKAVHFEECRGVSVQGVTLQNAQQFQLTFTRCSCVKASFLRVIAPADSPNTDGIHLNDTSHVHITDNLISTGDDCVSMVGNCSDVHVKDISCGPGHGI SIGSLGKNRTTDMVENVRVDTCLLTNTTNGVRIKSWQGGMGFARDLRFENILMKNVSNPIIVDQYYCDQPTPCANQTQAVEVRKVEFANIRGTSATAQAI SIACSDTVPCRELELANVNLTLAEGGGRATALCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MAVRLPLALA AVAAVLLLLL CRGGGAEARV LLTLDDFGGV GDGIANDTQA LLDAWTAACT 60 SSEEAVLAVP AGKAYRIWPV QLSGPCKKKL KLLISGAIVA PSSPDEWAGR DPMKWLYIYG 120 VDGLSVSGGG TIDGMGQQWW ASTCKRKKTQ PCYSGPRPKA VHFEECRGVS VQGVTLQNAQ 180 QFQLTFTRCS CVKASFLRVI APADSPNTDG IHLNDTSHVH ITDNLISTGD DCVSMVGNCS 240 DVHVKDISCG PGHGISIGSL GKNRTTDMVE NVRVDTCLLT NTTNGVRIKS WQGGMGFARD 300 LRFENILMKN VSNPIIVDQY YCDQPTPCAN QTQAVEVRKV EFANIRGTSA TAQAISIACS 360 DTVPCRELEL ANVNLTLAEG GGRATALCYR ASGKSVGTVV PPSCLAKS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 8.0e-89 | 32 | 408 | 382 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-90 | 59 | 388 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-91 | 37 | 404 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-105 | 32 | 401 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-155 | 31 | 408 | 378 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 27 | 408 | 29 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 1 | 408 | 1 | 407 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 1 | 408 | 1 | 382 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 27 | 408 | 29 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 21 | 408 | 21 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-23 | 126 | 321 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-17 | 124 | 388 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-17 | 124 | 388 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-17 | 124 | 388 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-17 | 124 | 388 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
