| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g027160.1 |
| Family | GH28 |
| Protein Properties | Length: 424 Molecular Weight: 45055.8 Isoelectric Point: 6.0813 |
| Chromosome | Chromosome/Scaffold: 9 Start: 56256643 End: 56259105 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 387 | 0 |
| TAACTAGDNVILNVPAAGTFQIWPLTLAGPCRSEIKLLISGDIVAPESPSDWGQGQRSQWLHFHKVQDLKITGGGIIDGRGQQWWAQSSLMGAQPAPKAV HFEDCQGISVKGITLQNSQSYHLTFTRSSNVEANYLRVTSPEDSIDTKGIHLVDSFNVHVMDNLISTGDDCVSIVGNCEDVRLRAISCGPGHGISIGTLG VNNSVDYVEKIKVDTLFISNTKNGVRVRTTRSGGGGFARKVKFESIVMRNVTNPIIVDQGNSDHLPASSEAVAPAAATAVQVEKINYIDITGTSASKHAV TFSCSDAKPCRHLSLVNVNLTQVDGTKALSYCRKA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 424 Download |
| MARGTVLLLL TAAFAAALLP DAAESRILLT LHDFGAVGDG VADDTKALAD AWTAACTAGD 60 NVILNVPAAG TFQIWPLTLA GPCRSEIKLL ISGDIVAPES PSDWGQGQRS QWLHFHKVQD 120 LKITGGGIID GRGQQWWAQS SLMGAQPAPK AVHFEDCQGI SVKGITLQNS QSYHLTFTRS 180 SNVEANYLRV TSPEDSIDTK GIHLVDSFNV HVMDNLISTG DDCVSIVGNC EDVRLRAISC 240 GPGHGISIGT LGVNNSVDYV EKIKVDTLFI SNTKNGVRVR TTRSGGGGFA RKVKFESIVM 300 RNVTNPIIVD QGNSDHLPAS SEAVAPAAAT AVQVEKINYI DITGTSASKH AVTFSCSDAK 360 PCRHLSLVNV NLTQVDGTKA LSYCRKAFGR SIGTVIPESC LSKEDFVQHV PQRSQDGEED 420 SDS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-52 | 70 | 400 | 336 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-57 | 66 | 403 | 339 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-59 | 64 | 373 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 9.0e-61 | 62 | 398 | 343 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-95 | 66 | 402 | 341 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY98883.1 | 0 | 21 | 408 | 22 | 415 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
| GenBank | EEE64554.1 | 0 | 21 | 408 | 28 | 421 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056199.1 | 0 | 21 | 408 | 28 | 421 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151374.1 | 0 | 24 | 423 | 24 | 429 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440168.1 | 0 | 1 | 423 | 1 | 423 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-19 | 123 | 373 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-16 | 119 | 386 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-16 | 119 | 386 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-16 | 119 | 386 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-16 | 119 | 386 | 68 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
