y
Basic Information | |
---|---|
Species | Sorghum bicolor |
Cazyme ID | Sb09g029700.1 |
Family | CBM43 |
Protein Properties | Length: 248 Molecular Weight: 24839.7 Isoelectric Point: 6.6354 |
Chromosome | Chromosome/Scaffold: 9 Start: 58338608 End: 58340416 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 74 | 156 | 3.9e-36 |
WCVASPSASATALQVALDYACGQGGADCSPIQQGGSCFSPDTVRDHASYAFNSYYQKNPVQTSCDFAGTAVLTTTNPSTSTCQ |
Full Sequence |
---|
Protein Sequence Length: 248 Download |
MALRPVHGLA SLLVLLSCHC HGGRSEQGAE VPRLEHDVTS PLATVPVVNP TATPVAMPTA 60 TPTPSLATGG GGSWCVASPS ASATALQVAL DYACGQGGAD CSPIQQGGSC FSPDTVRDHA 120 SYAFNSYYQK NPVQTSCDFA GTAVLTTTNP STSTCQYPAT STGGSVLNTS TPLTPTYGSP 180 PGYGSSPPAG YGNSPPLYGN MSPPNYGDNI SAAVRALQPG RRTTTAAVSL ATTCLLTAAL 240 SLTTVSG* 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-23 | 73 | 144 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 73 | 157 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 0 | 35 | 246 | 53 | 266 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 0 | 35 | 246 | 53 | 266 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001056434.1 | 0 | 35 | 246 | 53 | 276 | Os05g0581900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131448.1 | 0 | 73 | 242 | 108 | 293 | hypothetical protein LOC100192780 [Zea mays] |
RefSeq | XP_002441577.1 | 0 | 1 | 247 | 1 | 247 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-23 | 59 | 162 | 2 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |