| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g030850.1 |
| Family | PL4 |
| Protein Properties | Length: 727 Molecular Weight: 79143.3 Isoelectric Point: 5.5844 |
| Chromosome | Chromosome/Scaffold: 9 Start: 59479642 End: 59483425 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 40 | 702 | 0 |
| LHVDDPGQVVVVDNGMVQVSLSTPQGHITAVRVNSDHQNLLHYNATQANSGGYWDVVWNYPGSNQPKGMMDMLDGTEFKVVSSDEEQVELSFRSSYSPSS SPPNSLRLNVDKRFVMLRGSSGFYCYAILEHARECPALNISVARLAFKLNEDRFRYMAISDDIQRYMPSAADRDPPRGVPLDYKEAVLLVDPVEPEFKGE VDDKYQYSMDNKDNTVHGWIAADSGGGGVGFWVITPSNEFKNGGPLKRELTSHTGPTSLSVFLGPHYVGKDMVINFEEGEYWKKVLGPIFVYLNSGHHPL PAAGGSNDDDDDNVTNHLWEDAKAQAQAEVSKWPYSFPRSPDFAKAGERGSVTGRLWVRDRSYSNNDDKQQAAATQQPEPAAMAYVGLASPGKPGSWATE SKGYQFWTRATSDGSFSIGNVREGTYNLYAWVPGILGDYMHVSPVTIAASATAAVVNLGDDLVFEPPRSGPTLWEIGVPDRTAAEFYVPDADPKYASRLF LTKDRYRQYGLWERYAALYPAGDLVFTVGKSNHSRDWFFAHVTRRVVGGGGVVGNNNNNIETTTTTTTTSIVPTTWQIRFHLDRVVADGTYTLRIALAAS HMSNLKVQVNSGAGAGAGGEVNLLGDNNAIARHGIRGTQWSLDMDVKGHLLNQGDNTIYINQT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 727 Download |
| MAAAAPRSCL KLAVVGASML VLLAAAAGAP PPEAAGGVTL HVDDPGQVVV VDNGMVQVSL 60 STPQGHITAV RVNSDHQNLL HYNATQANSG GYWDVVWNYP GSNQPKGMMD MLDGTEFKVV 120 SSDEEQVELS FRSSYSPSSS PPNSLRLNVD KRFVMLRGSS GFYCYAILEH ARECPALNIS 180 VARLAFKLNE DRFRYMAISD DIQRYMPSAA DRDPPRGVPL DYKEAVLLVD PVEPEFKGEV 240 DDKYQYSMDN KDNTVHGWIA ADSGGGGVGF WVITPSNEFK NGGPLKRELT SHTGPTSLSV 300 FLGPHYVGKD MVINFEEGEY WKKVLGPIFV YLNSGHHPLP AAGGSNDDDD DNVTNHLWED 360 AKAQAQAEVS KWPYSFPRSP DFAKAGERGS VTGRLWVRDR SYSNNDDKQQ AAATQQPEPA 420 AMAYVGLASP GKPGSWATES KGYQFWTRAT SDGSFSIGNV REGTYNLYAW VPGILGDYMH 480 VSPVTIAASA TAAVVNLGDD LVFEPPRSGP TLWEIGVPDR TAAEFYVPDA DPKYASRLFL 540 TKDRYRQYGL WERYAALYPA GDLVFTVGKS NHSRDWFFAH VTRRVVGGGG VVGNNNNNIE 600 TTTTTTTTSI VPTTWQIRFH LDRVVADGTY TLRIALAASH MSNLKVQVNS GAGAGAGGEV 660 NLLGDNNAIA RHGIRGTQWS LDMDVKGHLL NQGDNTIYIN QTTPYQFAGV MYDYIRLEGP 720 STSTYS* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 4.0e-22 | 387 | 480 | 94 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-38 | 513 | 718 | 209 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-57 | 59 | 335 | 280 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-70 | 59 | 240 | 182 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 24 | 723 | 34 | 692 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066077.1 | 0 | 24 | 723 | 34 | 679 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152385.1 | 0 | 23 | 720 | 30 | 708 | lyase [Zea mays] |
| RefSeq | XP_002441644.1 | 0 | 1 | 726 | 1 | 726 | hypothetical protein SORBIDRAFT_09g030850 [Sorghum bicolor] |
| RefSeq | XP_002441731.1 | 0 | 9 | 723 | 28 | 715 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
