| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g000660.1 |
| Family | GH28 |
| Protein Properties | Length: 496 Molecular Weight: 52766.7 Isoelectric Point: 6.5 |
| Chromosome | Chromosome/Scaffold: 10 Start: 420429 End: 424231 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 442 | 0 |
| DAGGAMLYVPAGKWLTGPFNLTSHFTLFLHSDAVILASQDINEWPIIDPLPSYGRGRDKIGGRFASLVGGSNLTDVVITGNNGTIDGQGAMWWSKFHKNQ LKYTRGYLIELMHSDTIYISNLTLLNSPAWNIHPVYSSNIVVQGITILAPTNSPNTDGINPDSCSHVRIEDCYIVSGDDCVAIKSGWDEYGISYGMPSQH IVIRRLTCVSPTSAVIALGSEMSGGIQDVRAEDITAINSESGVRIKTAVGRGAYVKDVFVRRMTLTTMKWVFWMTGNYKSHPDDKYDPNAIPVVDNISYQ DVVATGVYKEAARLEGIQGAPFKGICVANVTADLSKSRKYPWTCADVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MALRTLHLNA PPLLHILRSL CLLVLAASAA VSVSGRHHAP TPAHGTGQSM YLAPACRAHT 60 ASLADFGGVG DGTTSNTAAF RSAVDHLSQY SGEDAGGAML YVPAGKWLTG PFNLTSHFTL 120 FLHSDAVILA SQDINEWPII DPLPSYGRGR DKIGGRFASL VGGSNLTDVV ITGNNGTIDG 180 QGAMWWSKFH KNQLKYTRGY LIELMHSDTI YISNLTLLNS PAWNIHPVYS SNIVVQGITI 240 LAPTNSPNTD GINPDSCSHV RIEDCYIVSG DDCVAIKSGW DEYGISYGMP SQHIVIRRLT 300 CVSPTSAVIA LGSEMSGGIQ DVRAEDITAI NSESGVRIKT AVGRGAYVKD VFVRRMTLTT 360 MKWVFWMTGN YKSHPDDKYD PNAIPVVDNI SYQDVVATGV YKEAARLEGI QGAPFKGICV 420 ANVTADLSKS RKYPWTCADV EGVSVNVSPA PCQPLQGAHD GACPFPTDTL PIDQVTVQQC 480 AYDVPGGTGA SGGGN* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-22 | 65 | 452 | 417 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 9.0e-24 | 66 | 444 | 392 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-25 | 60 | 423 | 382 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-30 | 161 | 452 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-57 | 61 | 358 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 50 | 485 | 1 | 436 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 1 | 485 | 1 | 482 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 1 | 485 | 1 | 483 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002437680.1 | 0 | 1 | 495 | 1 | 495 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 51 | 481 | 43 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.94273e-44 | 53 | 429 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.94273e-44 | 53 | 429 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.94273e-44 | 53 | 429 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.94273e-44 | 53 | 429 | 20 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.0000000000007 | 55 | 385 | 151 | 516 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
