| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g001710.1 |
| Family | CE8 |
| Protein Properties | Length: 311 Molecular Weight: 32840.6 Isoelectric Point: 6.5956 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1416813 End: 1418502 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 201 | 298 | 4.5e-27 |
| CSVAAAAAAAQDAAGAATTFLGRPWRDHSHVVFVDSYLDNVVNSQGWEQWNITSKVPHTVFYGEFHNRGPGADTTGRVRWPAFHLLNAAEAANFTGTN | |||
| CE8 | 55 | 199 | 0 |
| AQVAQDGRPGSYPTISQALEHAPTHEYEHVVFIGKGTYPETLTITRPNVRLVGEGIGRTIITGNRCKRTGYDTASSATVSVLGQGFMARDLTIENTAGVD AGQAVALRMSSDKSVCYRCELRGFQDTLWADAGDQFYRSCIITGT | |||
| Full Sequence |
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| Protein Sequence Length: 311 Download |
| MVVSNHEAGG RLVLVVVGLM LMTSAATTTD GDAAAAAAAA GGAPLRLSAG STTNAQVAQD 60 GRPGSYPTIS QALEHAPTHE YEHVVFIGKG TYPETLTITR PNVRLVGEGI GRTIITGNRC 120 KRTGYDTASS ATVSVLGQGF MARDLTIENT AGVDAGQAVA LRMSSDKSVC YRCELRGFQD 180 TLWADAGDQF YRSCIITGTG CSVAAAAAAA QDAAGAATTF LGRPWRDHSH VVFVDSYLDN 240 VVNSQGWEQW NITSKVPHTV FYGEFHNRGP GADTTGRVRW PAFHLLNAAE AANFTGTNGF 300 LDRFNNVPYY * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02170 | PLN02170 | 3.0e-56 | 54 | 302 | 290 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 2.0e-57 | 54 | 302 | 294 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 2.0e-60 | 45 | 295 | 296 | + pectinesterase | ||
| PLN02506 | PLN02506 | 6.0e-62 | 48 | 308 | 301 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 8.0e-76 | 54 | 302 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA94334.1 | 0 | 31 | 304 | 42 | 353 | Pectinesterase family protein [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY81365.1 | 0 | 31 | 304 | 42 | 353 | hypothetical protein OsI_36536 [Oryza sativa Indica Group] |
| RefSeq | NP_001061940.1 | 0 | 10 | 295 | 163 | 533 | Os08g0450100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437742.1 | 0 | 1 | 310 | 1 | 310 | hypothetical protein SORBIDRAFT_10g001710 [Sorghum bicolor] |
| RefSeq | XP_002512462.1 | 0 | 50 | 308 | 227 | 523 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 54 | 295 | 4 | 293 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 1.96182e-44 | 54 | 295 | 8 | 297 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.0000000000002 | 51 | 199 | 2 | 173 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.0000000000002 | 51 | 199 | 2 | 173 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.0000000000002 | 51 | 199 | 2 | 173 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
| Cleavage Site | |||||
| 28 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY801979 | 295 | 54 | 308 | 0 |
| DR100880 | 264 | 83 | 298 | 0 |
| FY433569 | 287 | 54 | 300 | 0 |
| DY829415 | 266 | 82 | 308 | 0 |
| CO475715 | 292 | 54 | 295 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Setaria italica | Si025266m.22.149 | Si025266m.22.149 | |||
| Sorghum bicolor | Sb10g001710.1.55.199 | Sb10g001710.1.55.199 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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