| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g002140.1 |
| Family | GT5 |
| Protein Properties | Length: 609 Molecular Weight: 66074 Isoelectric Point: 6.771 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1827074 End: 1831279 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 83 | 579 | 0 |
| NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFIDHPLFLERVWGKTEEKIY GPDAGTDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSNGIYKDAKTAFCIHNISYQGRFAFSDFPELNLP ERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIAVKYDVSTAVEAKAL NKEALQAEVGLPVDRKIPLVAFIGRLEEQKGPDVMAAAIPLLMEEDIQIVLLGTGKKKFERMLMSAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSR FEPCGLIQLQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENV | |||
| Full Sequence |
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| Protein Sequence Length: 609 Download |
| MSTLATSQLV ATHAGLGVPD ASMFRRGGVQ GLRAAARASA AAGDALSMRT SACPAPRQQP 60 AARRGGRGGR FPSLVVCATA GMNVVFVGAE MAPWSKTGGL GDVLGGLPPA MAANGHRVMV 120 VSPRYDQYKD AWDTSVVSEI KMGDGYETVR FFHCYKRGVD RVFIDHPLFL ERVWGKTEEK 180 IYGPDAGTDY KDNQLRFSLL CQAALEAPRI LSLNNNPYFS GPYGEDVVFV CNDWHTGPLS 240 CYLKSNYQSN GIYKDAKTAF CIHNISYQGR FAFSDFPELN LPERFKSSFD FIDGYEKPVE 300 GRKINWMKAG ILEADRVLTV SPYYAEELIS GIARGCELDN IMRLTGITGI VNGMDVSEWD 360 PSKDKYIAVK YDVSTAVEAK ALNKEALQAE VGLPVDRKIP LVAFIGRLEE QKGPDVMAAA 420 IPLLMEEDIQ IVLLGTGKKK FERMLMSAEE KYPDKVRAVV KFNAALAHHI MAGADLLAVT 480 SRFEPCGLIQ LQGMRYGTPC ACASTGGLVD TIIEGKTGFH MGRLSVDCNV VEPADVKKVA 540 TTLKRAIKVV GTPAYEEMVK NCMIQDLSWK GPAKNWENVL LSLGVAGGEP GIEGEEIAPL 600 AKENVAAP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 9.0e-80 | 82 | 576 | 512 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 8.0e-109 | 82 | 578 | 518 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-132 | 82 | 574 | 505 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 3.0e-167 | 82 | 583 | 521 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-173 | 83 | 580 | 511 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK80479.1 | 0 | 1 | 608 | 1 | 608 | putative granule bound starch synthase [Sorghum bicolor] |
| GenBank | ABK80481.1 | 0 | 1 | 608 | 1 | 608 | putative granule bound starch synthase [Sorghum bicolor] |
| GenBank | ABK80483.1 | 0 | 1 | 608 | 1 | 608 | putative granule bound starch synthase [Sorghum bicolor] |
| GenBank | ABK80497.1 | 0 | 1 | 608 | 1 | 608 | putative granule bound starch synthase [Sorghum bicolor] |
| RefSeq | XP_002436418.1 | 0 | 1 | 608 | 1 | 608 | hypothetical protein SORBIDRAFT_10g002140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 82 | 608 | 10 | 536 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3vue_A | 0 | 82 | 608 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 82 | 583 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 82 | 583 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 82 | 583 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| AJ568414 | 535 | 75 | 609 | 0 |
| HO825853 | 518 | 90 | 607 | 0 |
| HO629148 | 538 | 74 | 609 | 0 |
| DT643443 | 304 | 114 | 417 | 0 |
| DV516889 | 292 | 126 | 417 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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