| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g003080.1 |
| Family | PL1 |
| Protein Properties | Length: 466 Molecular Weight: 51524.3 Isoelectric Point: 9.1697 |
| Chromosome | Chromosome/Scaffold: 10 Start: 2752148 End: 2753940 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 187 | 384 | 0 |
| ITFARDMVINLCRELLVTSDKTIDGRGAQVHVVGAQITLQNVRNVILHNLHIHDAAPRGGGVIRDSKHHWGLRGESDGDGVSVMGSSDIWIDHVSMRSCA DGLVDVVDGSTAVTISNGHFTRHDHVMLFGASDAAVKDKAMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSQNPTIISQGNRFRA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 466 Download |
| MAVTAVVTRR PLSILFYIIL AAVAATTAAA AETPTDAAID AAYAQLVNVT ANQEYWAERA 60 EVAHAYNRAA YESDPVGVMD RFNDGVRRAM ETSTPTRSRS RSLAHKARGG PCTATNPIDQ 120 CWRCRGDWAR NRKRLARCGM GFGHRTTGGL AGRIYVVTDP SDEPANLVVP RKGTLRYAVI 180 QDRPLWITFA RDMVINLCRE LLVTSDKTID GRGAQVHVVG AQITLQNVRN VILHNLHIHD 240 AAPRGGGVIR DSKHHWGLRG ESDGDGVSVM GSSDIWIDHV SMRSCADGLV DVVDGSTAVT 300 ISNGHFTRHD HVMLFGASDA AVKDKAMQVT VAFNHFGKGL VQRMPRCRHG FFHVVNNDYT 360 HWLMYAIGGS QNPTIISQGN RFRAVDDGRF KEVTKREYTP YSEYKDWVWK SQDDLFLNGA 420 FFNQSGGENE RRFDRLDLIQ AKGGQYAELL TRYAGALNCR VGKKC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 8.0e-11 | 48 | 91 | 44 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 7.0e-30 | 146 | 383 | 262 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-60 | 199 | 382 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-67 | 192 | 386 | 211 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY99621.1 | 0 | 5 | 465 | 4 | 448 | hypothetical protein OsI_21600 [Oryza sativa Indica Group] |
| GenBank | EAY99626.1 | 0 | 1 | 465 | 1 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | NP_001056784.1 | 0 | 5 | 465 | 4 | 448 | Os06g0144900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150425.1 | 0 | 1 | 465 | 1 | 453 | LOC100284055 [Zea mays] |
| RefSeq | XP_002436463.1 | 0 | 1 | 465 | 1 | 465 | hypothetical protein SORBIDRAFT_10g003080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 116 | 457 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 116 | 457 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-22 | 146 | 373 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-17 | 201 | 382 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000000004 | 200 | 382 | 75 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
