| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g003090.1 |
| Family | PL1 |
| Protein Properties | Length: 445 Molecular Weight: 49624.2 Isoelectric Point: 9.6002 |
| Chromosome | Chromosome/Scaffold: 10 Start: 2757984 End: 2759638 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 160 | 363 | 0 |
| QDRPLWIVFARDMVIRLRQELIVTSDKTIDGRGAQVHVVGAQVTLQSVHDVILHNLHIHDAVAHSGGMIRDSKRHTGMRTRSDGDGISVLSSSNVWIDHV SMSRCADGLIDVVNGSTAITVSNSHFTHHDHVMLFGASNDNPQDEVMQITVAFNHFGRGLVQRMPRCRYGFFHVVNNDYTHWIMYAIGGNKNPTIISQGN RFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MSTMAAVILR SRRRHHLSVL FCAVVLAAAA QASSSNNNNV TSDEVYWAER AEAARSRNRA 60 AYVSDPVAAM NRFNADVLRA TTRRALARYS GPCMATNPID RCWRCRSDWA ADRKRLARCA 120 RGFGHRTTGG AAGKLYVVTD PSDDEMIVPR KGTLRHAVIQ DRPLWIVFAR DMVIRLRQEL 180 IVTSDKTIDG RGAQVHVVGA QVTLQSVHDV ILHNLHIHDA VAHSGGMIRD SKRHTGMRTR 240 SDGDGISVLS SSNVWIDHVS MSRCADGLID VVNGSTAITV SNSHFTHHDH VMLFGASNDN 300 PQDEVMQITV AFNHFGRGLV QRMPRCRYGF FHVVNNDYTH WIMYAIGGNK NPTIISQGNR 360 FIAPDDPNAK EVTKREYTAY KDYKEWVWKS QGDVMMNGAF FNESGGQNER KYDELDFIPA 420 KHGRYVGQLT RFAGPLKCIV GQPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-32 | 127 | 361 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-65 | 178 | 361 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-77 | 171 | 365 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA16476.1 | 0 | 4 | 444 | 1 | 438 | pectate lyase homolog [Zea mays] |
| DDBJ | BAD68402.1 | 0 | 4 | 444 | 1 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
| GenBank | EAY99626.1 | 0 | 4 | 444 | 1 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | NP_001056781.1 | 0 | 2 | 444 | 11 | 450 | Os06g0144200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437815.1 | 0 | 1 | 444 | 1 | 444 | hypothetical protein SORBIDRAFT_10g003090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 97 | 434 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 97 | 434 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-22 | 127 | 352 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 8e-17 | 175 | 399 | 71 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.00000000000004 | 177 | 361 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
