| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g003580.1 |
| Family | GH28 |
| Protein Properties | Length: 396 Molecular Weight: 42299.5 Isoelectric Point: 8.8858 |
| Chromosome | Chromosome/Scaffold: 10 Start: 3127707 End: 3129988 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 384 | 0 |
| KAACGSAGAVTMLLSPGTYYIGPVQFHGPCNASTLTFQLQGTLKADTDLSRFRNDWIEFGWVTGLTVAGGVIDGQGAASWPFNQCPFRKDCKVLPTSVRF VNTRNTAVRGVTSVNPKFFHMALLQARGVRMSGLRISAPAGSPNTDGIHIERSAGVSITDARIGTGDDCISIGQGNDGVDVARVRCGPGHGMSVGSLGRY AGEGDVTRVRVRDVVFTGTDNGVRIKTWENSPTKSSAAHMLFESLLMVDVRNPIIIDQKYCPYYTCEHKYVSGVTLQDIQFKNIKGTTTTPVAVTLRCGV PCQGLVLQDVDLKYKGEGGTSAKCENATAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MAWRRLLLLV VVVIVALLVF MSAGGAATTT VDVKHYGAKG NGVDDDTKPL MTAWKAACGS 60 AGAVTMLLSP GTYYIGPVQF HGPCNASTLT FQLQGTLKAD TDLSRFRNDW IEFGWVTGLT 120 VAGGVIDGQG AASWPFNQCP FRKDCKVLPT SVRFVNTRNT AVRGVTSVNP KFFHMALLQA 180 RGVRMSGLRI SAPAGSPNTD GIHIERSAGV SITDARIGTG DDCISIGQGN DGVDVARVRC 240 GPGHGMSVGS LGRYAGEGDV TRVRVRDVVF TGTDNGVRIK TWENSPTKSS AAHMLFESLL 300 MVDVRNPIII DQKYCPYYTC EHKYVSGVTL QDIQFKNIKG TTTTPVAVTL RCGVPCQGLV 360 LQDVDLKYKG EGGTSAKCEN ATAKYVGYQF PKPCT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-76 | 20 | 394 | 383 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-77 | 33 | 394 | 372 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-84 | 20 | 392 | 383 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-88 | 58 | 382 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 1 | 395 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 9 | 394 | 1 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| GenBank | EEE68484.1 | 0 | 30 | 394 | 38 | 388 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061556.1 | 0 | 30 | 394 | 38 | 406 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437842.1 | 0 | 30 | 395 | 30 | 395 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
| RefSeq | XP_002444237.1 | 0 | 29 | 394 | 24 | 390 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000007 | 124 | 342 | 117 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000008 | 85 | 380 | 41 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000008 | 85 | 380 | 41 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000008 | 85 | 380 | 41 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000008 | 85 | 380 | 41 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
