| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g004160.1 |
| Family | GT5 |
| Protein Properties | Length: 370 Molecular Weight: 41517.4 Isoelectric Point: 5.6017 |
| Chromosome | Chromosome/Scaffold: 10 Start: 3658365 End: 3664150 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 2 | 359 | 0 |
| FVVNDWHASLVPVLLAAKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGY SWEVTTAEGGQGLNELLSSRKSVLNGIVNGIDINDWNPATDKCIPCHYSVDDLSGKAKCKSALQKELGLPIRPEVPLIGFIGRLDYQKGIDLIQLIIPHL MRDDVQFVMLGSGDPELEDWMRSTESDFKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGENGEQ GTGWAFAPLTTENMLWTLRTAISTYKEHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQ | |||
| Full Sequence |
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| Protein Sequence Length: 370 Download |
| MFVVNDWHAS LVPVLLAAKY RPYGVYKDSR SILVIHNLAH QGVEPASTYP DLGLPPEWYG 60 ALEWVFPEWA RRHALDKGEA VNFLKGAVVT ADRIVTVSKG YSWEVTTAEG GQGLNELLSS 120 RKSVLNGIVN GIDINDWNPA TDKCIPCHYS VDDLSGKAKC KSALQKELGL PIRPEVPLIG 180 FIGRLDYQKG IDLIQLIIPH LMRDDVQFVM LGSGDPELED WMRSTESDFK DKFRGWVGFS 240 VPVSHRITAG CDILLMPSRF EPCGLNQLYA MQYGTVPVVH ATGGLRDTVE NFNPFGENGE 300 QGTGWAFAPL TTENMLWTLR TAISTYKEHK SSWEGLMKRG MSKDFTWDHA AEQYEQIFQW 360 AFIDRPYVM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-93 | 6 | 359 | 362 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 5.0e-126 | 4 | 367 | 364 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-156 | 4 | 359 | 358 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 4.0e-161 | 1 | 359 | 359 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 8.0e-172 | 2 | 360 | 359 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A2Y9M4 | 0 | 1 | 369 | 273 | 641 | SSY1_ORYSI RecName: Full=Soluble starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Starch synthase I; AltName: Full=SSS 1; Flags: Precursor |
| GenBank | ACN36715.1 | 0 | 1 | 369 | 1 | 369 | unknown [Zea mays] |
| GenBank | EAZ35910.1 | 0 | 1 | 369 | 273 | 641 | hypothetical protein OsJ_20213 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056881.1 | 0 | 1 | 369 | 273 | 641 | Os06g0160700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001104892.1 | 0 | 1 | 369 | 272 | 640 | plastid starch synthase I precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 1 | 358 | 156 | 508 | A Chain A, Rmlc (Dtdp-6-Deoxy-D-Xylo-4-Hexulose 3,5-Epimerase) Crystal Structure From Pseudomonas Aeruginosa, Apo Structure |
| PDB | 3vue_A | 0 | 1 | 358 | 156 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 5 | 358 | 136 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 5 | 358 | 136 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 5 | 358 | 136 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO872237 | 346 | 21 | 366 | 0 |
| GO841173 | 337 | 16 | 347 | 0 |
| CN147393 | 271 | 1 | 271 | 0 |
| JG964056 | 286 | 34 | 319 | 0 |
| HO595058 | 369 | 1 | 368 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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