| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g004730.1 |
| Family | CBM57 |
| Protein Properties | Length: 565 Molecular Weight: 61694.2 Isoelectric Point: 6.9086 |
| Chromosome | Chromosome/Scaffold: 10 Start: 4202620 End: 4214697 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 321 | 489 | 1.6e-28 |
| IFAINCGGKQIDYSDQMPTVFSEDLTDLGGAGFYVNTTSHWVTSHVGSDPFNKSAGIVNIDNILDSDMPELYKTARTSTSSLRYYVVGLANGKYTVKLFF AEIVITDGPGRRLFDIDIQNQNIRKDFDITKEAGGSRKGTNITQEVSVNNSILEIHLYWSGRGTCCIPY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 565 Download |
| MARSAPALVA VFLLVLALLT LDAAQGQQPF PPTDPSDAEA LHAVFRQWRL EGEAAAENPC 60 MKRVWSGSFE TNASIDCNCP SWCRITGLNV TGYRNITEIP LALFNLTELI SLDLSNNNLN 120 GSIPPEVGNL SKLETWHFNN NNLSGSFPHE SSLLRNLKSL WIFDNNVEGL IPEFIQNLTS 180 LTDLRIYGTK LQGPIPKKIS NLTNLEVLML GDLGGNHSYF DVIGEWANLS TLSLRKCGLT 240 GQLPNTPPNL PKLKYLDLTS NNLSGSLRLL LPYKDSSFIN YIGTSVDASG TVNSDILTIL 300 NCLRMKGCNR SSVTTGADHT IFAINCGGKQ IDYSDQMPTV FSEDLTDLGG AGFYVNTTSH 360 WVTSHVGSDP FNKSAGIVNI DNILDSDMPE LYKTARTSTS SLRYYVVGLA NGKYTVKLFF 420 AEIVITDGPG RRLFDIDIQN QNIRKDFDIT KEAGGSRKGT NITQEVSVNN SILEIHLYWS 480 GRGTCCIPYK GAYGPLVSAI KVTRSQDPTI SPPRAPSSDS ARQDEKRRGV VAGIAALCIA 540 AAVISSSVVY LWWKWVSLVK RPMA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 4.0e-7 | 123 | 217 | 95 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-9 | 65 | 242 | 204 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-13 | 98 | 242 | 145 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-14 | 92 | 242 | 158 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 2.0e-46 | 320 | 500 | 185 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21051.1 | 0 | 7 | 500 | 2 | 587 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC80088.1 | 0 | 28 | 564 | 26 | 607 | hypothetical protein OsI_21825 [Oryza sativa Indica Group] |
| RefSeq | NP_001056921.1 | 0 | 28 | 564 | 99 | 680 | Os06g0167500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002324865.1 | 0 | 33 | 533 | 23 | 556 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002436559.1 | 0 | 1 | 564 | 1 | 564 | hypothetical protein SORBIDRAFT_10g004730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 0.000000000009 | 98 | 212 | 406 | 520 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3rj0_A | 0.00000000001 | 109 | 267 | 393 | 551 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3rj0_A | 0.000000002 | 109 | 197 | 631 | 719 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3rj0_A | 0.0000005 | 109 | 273 | 293 | 461 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3rj0_A | 0.000003 | 55 | 176 | 605 | 722 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
