| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g006230.1 |
| Family | CE8 |
| Protein Properties | Length: 607 Molecular Weight: 62226 Isoelectric Point: 5.3744 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5630985 End: 5633850 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 296 | 590 | 0 |
| ITVAKDGSGNFRTVGEAVAAAPNSSETRTVIHVKAGTYEENVEVPPYKKNIALVGEGRDTTVITGSRSAADGWTTFRSATFGVSGEGFLARDITFRNTAG AARGQAVALRVNADLAALYRCGVDAHQDALYAHSFRQFYRECAVSGTVDVVFGDAAAVLQACSLLARVPLPGQSVVLTAQGRADPNEDTGIALHHCTVVS AAGGGLPAGTRTFLGRPWGAYARAVVMDSYLGQVVDREGWLEWPGAEPSRRDTVYFGEYGNDGPGADTEGRVDWAGVRQMEYDEAAQFAVENFIY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 607 Download |
| MAPVTFSPPL LLLAILLLTT AGTTQCHGHG HGHNHKSQRH HTGGTRMPKK TAAASASSPP 60 ADTVHHAICH TTPHPVSCLV AVASHLDAAV AGAKVAEASA VSVQLLPPNV LSVVLASLHG 120 AESALSSLSP TLSALSAPPA ASPVPAGASL RRGAAQDCQE LHAATLSSLS RSASLLAAAP 180 GAEGLPAVRA HLAAALTNKA TCLDGLAGAS GPRLGGLLAS LDDAYEHVSN SLALVAGRGV 240 SAAGFVNAVA KTIHNRRLLQ DDDGSGGDDD DSGGDDDDND GDDSGGNTGQ PAATVITVAK 300 DGSGNFRTVG EAVAAAPNSS ETRTVIHVKA GTYEENVEVP PYKKNIALVG EGRDTTVITG 360 SRSAADGWTT FRSATFGVSG EGFLARDITF RNTAGAARGQ AVALRVNADL AALYRCGVDA 420 HQDALYAHSF RQFYRECAVS GTVDVVFGDA AAVLQACSLL ARVPLPGQSV VLTAQGRADP 480 NEDTGIALHH CTVVSAAGGG LPAGTRTFLG RPWGAYARAV VMDSYLGQVV DREGWLEWPG 540 AEPSRRDTVY FGEYGNDGPG ADTEGRVDWA GVRQMEYDEA AQFAVENFIY GDEWLGATSF 600 PYDDDV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03043 | PLN03043 | 6.0e-128 | 153 | 602 | 468 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02713 | PLN02713 | 9.0e-129 | 192 | 602 | 426 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 4.0e-129 | 188 | 604 | 425 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 3.0e-160 | 296 | 592 | 300 | + Pectinesterase. | ||
| PLN02416 | PLN02416 | 2.0e-162 | 69 | 606 | 539 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAH56489.1 | 0 | 151 | 606 | 109 | 543 | pectin methylesterase 1 [Prunus persica] |
| GenBank | EEE65248.1 | 0 | 60 | 606 | 52 | 550 | hypothetical protein OsJ_20428 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057041.1 | 0 | 60 | 606 | 52 | 585 | Os06g0193200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002436630.1 | 0 | 1 | 606 | 1 | 606 | hypothetical protein SORBIDRAFT_10g006230 [Sorghum bicolor] |
| RefSeq | XP_002516192.1 | 0 | 68 | 606 | 47 | 543 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 296 | 602 | 9 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 298 | 604 | 7 | 313 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-20 | 295 | 561 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-20 | 295 | 561 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-20 | 295 | 561 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
