Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb10g008200.1 |
Family | GT5 |
Protein Properties | Length: 764 Molecular Weight: 82992 Isoelectric Point: 6.5136 |
Chromosome | Chromosome/Scaffold: 10 Start: 8207997 End: 8212062 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 285 | 756 | 0 |
AAECGLGDVVGALPKALARRGHRVMVVVPRYGDYVEAFDMGIRKYYKAAGQDLEVNYFHAFIDGVDFVFIDAPLFRHRQNDIYGGSRQEILKRMILFCKV AVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDHGLMQYTRSILVIHNIAHQGRGPVAEFPYMDLPEHYLQHFELYDPVGGEHANIFAAGL KMADRVVTVSRGYLWELKTVEGGWGLHDIIRSNDWKINGIVNGIDHQEWNPKVDVHLRSDGYTNYSLETLDAGKRQCKAALQRELGLEVRDDVPLLGFIG RLDGQKGVDIIGDAMPWIAGQDVQLVMLGTGRADLERMLQHLEREHPSKVRGWVGFSVPMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVG GLRDTVAPFDPFGDAGLGWTFDRAEVNKLIEALRHCLDTYRNYGESWKSIQARGMAQDLSWDHAAELYEDVL |
Full Sequence |
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Protein Sequence Length: 764 Download |
MSSAAVSSAS STFFLALASS ASPGGRRRAR VGSPPFHTGA GPNFAFWRAP PRVPRDAALV 60 RAEAEGGGKD APPERSGDAA AAAASRLPRA ARRKAVSKRR DPLQPVGRYG SSGTGNTARS 120 GAATASTQNA ALAAVEIKSI VAAPPTSIVK FPAPGYRVIL PSGDIAPETV VPAPKPLPLH 180 GSPGANSVRP ASIPDPDTHG DVELAEKKPA QVDGDYSNGV APPPAEPVVQ EATWDFKKYI 240 GFEEPVEAKD DSGVAADGAD SFEHYENNDS GPLAGENVMN VIVVAAECGL GDVVGALPKA 300 LARRGHRVMV VVPRYGDYVE AFDMGIRKYY KAAGQDLEVN YFHAFIDGVD FVFIDAPLFR 360 HRQNDIYGGS RQEILKRMIL FCKVAVEVPW HVPCGGVCYG DGNLVFIAND WHTALLPVYL 420 KAYYRDHGLM QYTRSILVIH NIAHQGRGPV AEFPYMDLPE HYLQHFELYD PVGGEHANIF 480 AAGLKMADRV VTVSRGYLWE LKTVEGGWGL HDIIRSNDWK INGIVNGIDH QEWNPKVDVH 540 LRSDGYTNYS LETLDAGKRQ CKAALQRELG LEVRDDVPLL GFIGRLDGQK GVDIIGDAMP 600 WIAGQDVQLV MLGTGRADLE RMLQHLEREH PSKVRGWVGF SVPMAHRITA GADVLVMPSR 660 FEPCGLNQLY AMAYGTVPVV HAVGGLRDTV APFDPFGDAG LGWTFDRAEV NKLIEALRHC 720 LDTYRNYGES WKSIQARGMA QDLSWDHAAE LYEDVLVKAK YQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 1.0e-77 | 279 | 752 | 500 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 3.0e-126 | 279 | 754 | 492 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 1.0e-152 | 279 | 756 | 497 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 279 | 759 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 280 | 756 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD13341.1 | 0 | 1 | 763 | 1 | 732 | starch synthase isoform zSTSII-1 [Zea mays] |
GenBank | AAS77569.1 | 0 | 1 | 763 | 1 | 729 | starch synthase IIa [Zea mays] |
GenBank | ACC86844.1 | 0 | 1 | 763 | 1 | 743 | starch synthase IIa precursor [Sorghum bicolor] |
GenBank | ACR34914.1 | 0 | 1 | 763 | 1 | 732 | unknown [Zea mays] |
RefSeq | XP_002436755.1 | 0 | 1 | 763 | 1 | 763 | hypothetical protein SORBIDRAFT_10g008200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 279 | 757 | 10 | 509 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
PDB | 3vue_A | 0 | 279 | 757 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 279 | 760 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 1rzv_B | 0 | 279 | 752 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 279 | 752 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 446 | 764 | 0 |
HO777841 | 189 | 272 | 453 | 0 |
HO781048 | 395 | 370 | 764 | 0 |
HO445868 | 438 | 327 | 764 | 0 |
HO781048 | 41 | 331 | 371 | 0.43 |
Sequence Alignments (This image is cropped. Click for full image.) |
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