| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g020500.1 |
| Family | GH3 |
| Protein Properties | Length: 810 Molecular Weight: 87860.6 Isoelectric Point: 7.0057 |
| Chromosome | Chromosome/Scaffold: 10 Start: 44393216 End: 44396344 |
| Description | beta-D-xylosidase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 96 | 365 | 0 |
| GAPRVGLPPYKWWSEALHGVSSTGPTMLFDDLHSKPGNHSGRATVNNATVFANVINSAASFNETLWKSIGQAVSTEARAMYNLGKGGLTYWSPNINVVRD PRWGRALETPGEDPFVAGRYAVNFVRGMQDIPGHDGGGDDPSTRPIKTSACCKHYAAYDVDDWHNHTRFTFDARVSERDMAETFLRPFEMCVRDGDASGV MCSYNRVNGIPACADARLLSGTIRGDWQLHGYIVSDCDAVRVMTDNATWLHFTGAESSAASIRAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 810 Download |
| MAASHLLLVL AAMLIVIPVA CSSRTLPSSS TTVNVTSFGK AYTKVCDADR FAEMGLNMSA 60 FPYCDASLPY ADRVRDLIGW MTVEEKVGNL GDVSHGAPRV GLPPYKWWSE ALHGVSSTGP 120 TMLFDDLHSK PGNHSGRATV NNATVFANVI NSAASFNETL WKSIGQAVST EARAMYNLGK 180 GGLTYWSPNI NVVRDPRWGR ALETPGEDPF VAGRYAVNFV RGMQDIPGHD GGGDDPSTRP 240 IKTSACCKHY AAYDVDDWHN HTRFTFDARV SERDMAETFL RPFEMCVRDG DASGVMCSYN 300 RVNGIPACAD ARLLSGTIRG DWQLHGYIVS DCDAVRVMTD NATWLHFTGA ESSAASIRAG 360 LDLDCAESWI EEKGRPLRDF LSEYGKAAVA QGKMRESDID SALRNQYMTL MRLGYFDNIP 420 RYASLNETDI CTDEHKSLAH DGARQGMVLL KNDDGLLPLD PEKILAVAVH GPHARAPEKI 480 MDGDYTGPPC RYVTPRQGIS KDVKISHRAN TTIYLGGINL HIEREGNDRE DLLLPKNQTE 540 EILHFAKASP NPIILVILSG GGIDISFAHK HPKIGAILWA GYPGGEGGNA IADVIFGRYN 600 PGGRLPLTWF KNKYIQQIPM TSMEFRPVPE KGYPGRTYKF YDGPEVLYPF GYGLSYTKFL 660 YETSTNGTAV TLPATGGHCK GLSYKPSVAT TPACQAVDVA GHACTETVSF NISVTNAGGR 720 GGAHVVLVYT APPPEVAQAP IKQVAAFRRV FVPARSTATV PFTLNVCKAF GIVERTAYTV 780 VPSGVSKVLV QNGDSSSSVS FPVKIDFSV* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 2.0e-46 | 81 | 486 | 428 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 7.0e-47 | 447 | 657 | 244 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 2.0e-52 | 77 | 405 | 330 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 7.0e-62 | 74 | 766 | 782 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 59 | 800 | 771 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY81859.1 | 0 | 5 | 809 | 11 | 816 | hypothetical protein OsI_37025 [Oryza sativa Indica Group] |
| RefSeq | NP_001068511.1 | 0 | 6 | 809 | 15 | 816 | Os11g0696400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146482.1 | 0 | 35 | 809 | 52 | 835 | hypothetical protein LOC100280070 [Zea mays] |
| RefSeq | XP_002437062.1 | 0 | 21 | 809 | 21 | 809 | hypothetical protein SORBIDRAFT_10g020500 [Sorghum bicolor] |
| RefSeq | XP_002455502.1 | 0 | 35 | 809 | 40 | 825 | hypothetical protein SORBIDRAFT_03g012290 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 186 | 764 | 128 | 696 | A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus |
| PDB | 3u48_A | 0 | 186 | 764 | 128 | 696 | A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus |
| PDB | 3u4a_B | 0 | 186 | 764 | 128 | 696 | A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus |
| PDB | 3u4a_A | 0 | 186 | 764 | 128 | 696 | A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus |
| PDB | 2x41_A | 2e-39 | 72 | 760 | 2 | 671 | A Chain A, Crystal Structure Of Acid Phosphatase 1 (Acp1) From Mus Musculus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
