| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g021590.1 |
| Family | GH28 |
| Protein Properties | Length: 423 Molecular Weight: 43995.2 Isoelectric Point: 7.437 |
| Chromosome | Chromosome/Scaffold: 10 Start: 47615669 End: 47617601 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 79 | 411 | 0 |
| AAACGKEGPQTLMIPKGDYLTGPLNFSGPCKGSVTIQLDGNLLGTTDLSAYKTNWIEIEHVDNLVISGKGTLDGQGKQVWDNNKCAQKYDCKILPNTLVL DFCNNATVSGITLLNSKFFHMNVFQCKGVTIKDVTVTAPGDSPNTDGIHIGDSSKVTITGTTIGVGDDCISIGPGSTGINVTGVTCGPGHGISVGSLGRY KDEKDVTDINVKDCTLKKTSNGVRIKSYEDAACVITASKLHYENIAMDDVANPIIIDMKYCPNKICTAKGDSKVTVKDVTFKNITGTSSTPEAVSLLCSD KIPCSGVTMDNIKVEYKGTNNKTMAVCQNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MALGSNAMRV FFLLAMVVCA AQAAGKAAPK EKEKGKDDKS GGAPAEAPSG SAGGSDISKL 60 GAKGDGKTDS TKALNEAWAA ACGKEGPQTL MIPKGDYLTG PLNFSGPCKG SVTIQLDGNL 120 LGTTDLSAYK TNWIEIEHVD NLVISGKGTL DGQGKQVWDN NKCAQKYDCK ILPNTLVLDF 180 CNNATVSGIT LLNSKFFHMN VFQCKGVTIK DVTVTAPGDS PNTDGIHIGD SSKVTITGTT 240 IGVGDDCISI GPGSTGINVT GVTCGPGHGI SVGSLGRYKD EKDVTDINVK DCTLKKTSNG 300 VRIKSYEDAA CVITASKLHY ENIAMDDVAN PIIIDMKYCP NKICTAKGDS KVTVKDVTFK 360 NITGTSSTPE AVSLLCSDKI PCSGVTMDNI KVEYKGTNNK TMAVCQNAKG SATGCLKELA 420 CF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-76 | 56 | 413 | 365 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-79 | 57 | 408 | 358 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-82 | 57 | 422 | 373 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-115 | 82 | 412 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-126 | 56 | 414 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001105432.1 | 0 | 1 | 422 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001105862.1 | 0 | 1 | 422 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 1 | 422 | 1 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 1 | 422 | 1 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| RefSeq | XP_002438528.1 | 0 | 1 | 422 | 1 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-22 | 144 | 392 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 7e-22 | 150 | 413 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-22 | 150 | 413 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-22 | 150 | 413 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-22 | 150 | 413 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
