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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb10g021670.1 |
Family | AA7 |
Protein Properties | Length: 519 Molecular Weight: 56816 Isoelectric Point: 9.6399 |
Chromosome | Chromosome/Scaffold: 10 Start: 47849625 End: 47855206 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 60 | 508 | 0 |
ATPTPIAIVAARSASHVQSAVRCGVRHGVSVRPRSGGHDYEGLSYRALRAAGRPFAVVDLALLRAVSVDVWNETAWVGSGATLGELYYAIANHTARLGFP GGLGPTVGVGGHLSGGGFGLLLRKHGLAADHVVDAVIVDAMGRLLDRAAMGEDLFWAIRGGGGGSFGVVLSWKLRLVRVPPVVTVFTIHRPRNQSATALL TRWQHVAPALPRDVFLRVVLQNQDAQFESLYLGACAGLVATMARSFPELGMKAQDCIEMTWIQAVLYFAFYGTGKPMEQLLDRGTKPDRYFKAKSDYVTE PMASHVWERTWSWLLRDGAGLLILDPYGGRMRSVAPSATPFPHRRELYNLQYYGYWFENGTEAKEKHVGWIRGLHREMEPYVSKNPRGAYVNYRDLDLGV NDDDGHGGVTSYGKARVWGETYFKANFERLAAVKAKVDPHDFFRHEQSI |
Full Sequence |
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Protein Sequence Length: 519 Download |
MAHVASVTPA AAAPSPDTAS FLHCLAVHLP PRAVYTNASR SLYTLALESS IRNLLFVTPA 60 TPTPIAIVAA RSASHVQSAV RCGVRHGVSV RPRSGGHDYE GLSYRALRAA GRPFAVVDLA 120 LLRAVSVDVW NETAWVGSGA TLGELYYAIA NHTARLGFPG GLGPTVGVGG HLSGGGFGLL 180 LRKHGLAADH VVDAVIVDAM GRLLDRAAMG EDLFWAIRGG GGGSFGVVLS WKLRLVRVPP 240 VVTVFTIHRP RNQSATALLT RWQHVAPALP RDVFLRVVLQ NQDAQFESLY LGACAGLVAT 300 MARSFPELGM KAQDCIEMTW IQAVLYFAFY GTGKPMEQLL DRGTKPDRYF KAKSDYVTEP 360 MASHVWERTW SWLLRDGAGL LILDPYGGRM RSVAPSATPF PHRRELYNLQ YYGYWFENGT 420 EAKEKHVGWI RGLHREMEPY VSKNPRGAYV NYRDLDLGVN DDDGHGGVTS YGKARVWGET 480 YFKANFERLA AVKAKVDPHD FFRHEQSIPP LVSTLRNL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 0.0004 | 71 | 152 | 83 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 4.0e-11 | 71 | 152 | 83 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 2.0e-18 | 448 | 509 | 62 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD54128.1 | 0 | 17 | 511 | 34 | 526 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01286.1 | 0 | 18 | 513 | 35 | 531 | hypothetical protein OsI_23311 [Oryza sativa Indica Group] |
RefSeq | NP_001057827.1 | 0 | 17 | 513 | 34 | 534 | Os06g0548200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130124.1 | 0 | 17 | 499 | 41 | 520 | hypothetical protein LOC100191218 [Zea mays] |
RefSeq | XP_002438539.1 | 0 | 1 | 518 | 1 | 518 | hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 20 | 512 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 20 | 512 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 14 | 513 | 4 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 14 | 513 | 4 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 14 | 513 | 4 | 498 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT653726 | 245 | 255 | 499 | 0 |
CD426586 | 211 | 290 | 500 | 0 |
EE183308 | 230 | 270 | 499 | 0 |
DR794835 | 212 | 288 | 499 | 0 |
EB638085 | 195 | 305 | 499 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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