| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g021700.1 |
| Family | AA7 |
| Protein Properties | Length: 530 Molecular Weight: 57560.7 Isoelectric Point: 9.4402 |
| Chromosome | Chromosome/Scaffold: 10 Start: 47979244 End: 47981196 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 77 | 310 | 0 |
| VRPLYIVTPTNASHVQAAVLCGRRNGMRIRVRSGGHDYEGLSYRSERPEVFAVLDLSNLRAVRVDRQTSTAWVDSGATLGELYYAVGKASNLLGFPAGLC PTVGVGGHFSGGGFGMLLRKYGLAIDNVVDAVLVDAKGRLLNKNTMGSDVFWAIRGGGGESFGVVLSWQVKLVPVPATVTVFNVPVSASQGAVDVVTRWQ QVAPSLPDDLFIRVLVQQQTATFQSLFLGTCDAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 530 Download |
| MAMAKSLSPP AVLIFALLFS YAASIASSQA TSSSDGFLQC LSASIPSQLV FTQSSPSFTP 60 LLKSSIKNPK FFTPSIVRPL YIVTPTNASH VQAAVLCGRR NGMRIRVRSG GHDYEGLSYR 120 SERPEVFAVL DLSNLRAVRV DRQTSTAWVD SGATLGELYY AVGKASNLLG FPAGLCPTVG 180 VGGHFSGGGF GMLLRKYGLA IDNVVDAVLV DAKGRLLNKN TMGSDVFWAI RGGGGESFGV 240 VLSWQVKLVP VPATVTVFNV PVSASQGAVD VVTRWQQVAP SLPDDLFIRV LVQQQTATFQ 300 SLFLGTCDAL LPVMSSRFPE LRFNRTSCKE MTWIQSVPYI YLGSGSTVED LLNRTTAASV 360 FSSGYKATSD YVRQAIPRGV WANIFSKLAQ PNAGLMILDP YGGARIGGVP ESATPFPHRA 420 GVLYNIQYMN FWSMAGGDGA VQTKWIRDFY AFMAPYVSSN PREAYFNYRD LDLGENVVVG 480 NVSSYQAGMV WGHKYFKDNY RRLAMAKSQI DPDDYFRNEQ SIPPLANSN* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 1.0e-15 | 464 | 523 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 1.0e-18 | 77 | 275 | 207 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-21 | 79 | 218 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD53702.1 | 0 | 34 | 525 | 30 | 519 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01292.1 | 0 | 34 | 525 | 30 | 519 | hypothetical protein OsI_23321 [Oryza sativa Indica Group] |
| RefSeq | NP_001057833.1 | 0 | 34 | 525 | 35 | 524 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438542.1 | 0 | 1 | 529 | 1 | 526 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
| RefSeq | XP_002438543.1 | 0 | 1 | 529 | 1 | 529 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 37 | 525 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 37 | 525 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 32 | 525 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 32 | 525 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 32 | 525 | 6 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
