| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g022830.1 |
| Family | PL1 |
| Protein Properties | Length: 455 Molecular Weight: 51179 Isoelectric Point: 8.9203 |
| Chromosome | Chromosome/Scaffold: 10 Start: 51161212 End: 51163082 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 171 | 372 | 0 |
| WITFARTMIITLKEELIIQGDKTIDGRGAQVRIANGAQLTVQFANNVIIHNVHINDIMSSNKNGGNIRDSPDHFGWRTVSDGDGITLFGSTNVWLDHLSL SNCQDGLIDVIVKSTGVTISNCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRY IA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 455 Download |
| MEEEGFRWSR AGSFVLFYLV LFLSAAVSSE ANIGDFDDYW RQRKLMADAA AEATYKHDPL 60 EVTNQLNRAV HRSVEKEDMS TRRRAMMGHK KGKLNNGPCE ATNPIDRCWR CRQDWATDRK 120 RLARCAQGFG RNTTGGLAGK FYVVTDGTDD DVVNPRPGTL RWAVIQIEPL WITFARTMII 180 TLKEELIIQG DKTIDGRGAQ VRIANGAQLT VQFANNVIIH NVHINDIMSS NKNGGNIRDS 240 PDHFGWRTVS DGDGITLFGS TNVWLDHLSL SNCQDGLIDV IVKSTGVTIS NCHMTNHNDV 300 MLFSSSDKHP EDQIMQITVA FNHFGRGLVQ RMPRCRWGFF HVVNNDYTHW LMYAIGGSKA 360 PTIISQGNRY IAPPNLAAKL VTKHHDAPES EWKNWVWHSE NDLFMEGANF TVSGGQKINR 420 NFHKKDLIKP KNGSYVTRLT RYAGALACRP GKPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 1.0e-13 | 32 | 83 | 52 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-20 | 253 | 368 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-58 | 183 | 370 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-64 | 178 | 374 | 208 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 6 | 454 | 7 | 444 | unknown [Zea mays] |
| RefSeq | NP_001057945.1 | 0 | 28 | 454 | 30 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150723.1 | 0 | 4 | 454 | 3 | 451 | pectate lyase [Zea mays] |
| RefSeq | XP_002437204.1 | 0 | 1 | 454 | 1 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 6 | 454 | 8 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 103 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 103 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-19 | 177 | 361 | 55 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.00000000001 | 188 | 382 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.00000000004 | 188 | 382 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
