| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g024000.1 |
| Family | GH28 |
| Protein Properties | Length: 196 Molecular Weight: 20387.3 Isoelectric Point: 7.5696 |
| Chromosome | Chromosome/Scaffold: 10 Start: 52819222 End: 52820128 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 184 | 0 |
| GDSSGVTIENTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGS | |||
| Full Sequence |
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| Protein Sequence Length: 196 Download |
| MGDSSGVTIE NTVIGVGDDC ISIGPGTTKV NITGVTCGPG HGISIGSLGR YKDEKDVTDI 60 NVKDCTLKKT SNGLRIKAYE DAASVLTASK IHYENIKMED SSNPIIIDMK YCPNKICTAS 120 GASKVTVKDV SFKNVTGTSA SPEAVSLLCS DKIPCTGVTM DNVKVEYSGK NNKTMAVCQN 180 AKGSATGCLK ELACF* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-40 | 4 | 195 | 192 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-41 | 3 | 181 | 179 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-50 | 4 | 195 | 193 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-64 | 4 | 187 | 184 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-66 | 1 | 185 | 185 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD79097.1 | 0 | 1 | 195 | 210 | 404 | Zea m 13 allergen [Zea mays] |
| RefSeq | NP_001105862.1 | 0 | 1 | 195 | 216 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 1 | 195 | 216 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 1 | 195 | 216 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| RefSeq | XP_002438669.1 | 0 | 1 | 195 | 1 | 195 | hypothetical protein SORBIDRAFT_10g024000 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG879063 | 196 | 1 | 196 | 0 |
| FL806437 | 196 | 1 | 196 | 0 |
| FL752313 | 196 | 1 | 196 | 0 |
| CF480173 | 180 | 17 | 196 | 0 |
| CF487334 | 176 | 21 | 196 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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