y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb10g024000.1 |
Family | GH28 |
Protein Properties | Length: 196 Molecular Weight: 20387.3 Isoelectric Point: 7.5696 |
Chromosome | Chromosome/Scaffold: 10 Start: 52819222 End: 52820128 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 184 | 0 |
GDSSGVTIENTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDS SNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSDKIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGS |
Full Sequence |
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Protein Sequence Length: 196 Download |
MGDSSGVTIE NTVIGVGDDC ISIGPGTTKV NITGVTCGPG HGISIGSLGR YKDEKDVTDI 60 NVKDCTLKKT SNGLRIKAYE DAASVLTASK IHYENIKMED SSNPIIIDMK YCPNKICTAS 120 GASKVTVKDV SFKNVTGTSA SPEAVSLLCS DKIPCTGVTM DNVKVEYSGK NNKTMAVCQN 180 AKGSATGCLK ELACF* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-40 | 4 | 195 | 192 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-41 | 3 | 181 | 179 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-50 | 4 | 195 | 193 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-64 | 4 | 187 | 184 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-66 | 1 | 185 | 185 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD79097.1 | 0 | 1 | 195 | 210 | 404 | Zea m 13 allergen [Zea mays] |
RefSeq | NP_001105862.1 | 0 | 1 | 195 | 216 | 410 | exopolygalacturonase precursor [Zea mays] |
Swiss-Prot | P35339 | 0 | 1 | 195 | 216 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
RefSeq | XP_002437275.1 | 0 | 1 | 195 | 216 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
RefSeq | XP_002438669.1 | 0 | 1 | 195 | 1 | 195 | hypothetical protein SORBIDRAFT_10g024000 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000000006 | 3 | 186 | 160 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG879063 | 196 | 1 | 196 | 0 |
FL806437 | 196 | 1 | 196 | 0 |
FL752313 | 196 | 1 | 196 | 0 |
CF480173 | 180 | 17 | 196 | 0 |
CF487334 | 176 | 21 | 196 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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