| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g024010.1 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 42887 Isoelectric Point: 7.6637 |
| Chromosome | Chromosome/Scaffold: 10 Start: 52823502 End: 52824763 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 399 | 0 |
| TSACGGTGKQTILIPKGDYLVGPLNFTGPCKGDVTIQVDGNLLATTDLSQYKGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCAKKYDCKILPNSLVL DYVNNGEVSGITLLNAKFFHMNVFQCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGVTIENTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRY KDEKDVTDINVKDCTLKKTSNGLRIKAYEDAASVLTASKIHYENIKMEDSSNPIIIDMKYCPNKICTASGASKVTVKDVSFKNVTGTSASPEAVSLLCSD KIPCTGVTMDNVKVEYSGKNNKTMAVCQNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MACTGNAMRA FFLLAFVCAA HAGKDAPAKD GDAKAASGPG GSFDISKLGA SGDGKKDSTK 60 AVQEAWTSAC GGTGKQTILI PKGDYLVGPL NFTGPCKGDV TIQVDGNLLA TTDLSQYKGN 120 WIEILRVDNL VITGKGKLDG QGPAVWSKNS CAKKYDCKIL PNSLVLDYVN NGEVSGITLL 180 NAKFFHMNVF QCKDMLIKDV TVTAPGDSPN TDGIHMGDSS GVTIENTVIG VGDDCISIGP 240 GTTKVNITGV TCGPGHGISI GSLGRYKDEK DVTDINVKDC TLKKTSNGLR IKAYEDAASV 300 LTASKIHYEN IKMEDSSNPI IIDMKYCPNK ICTASGASKV TVKDVSFKNV TGTSASPEAV 360 SLLCSDKIPC TGVTMDNVKV EYSGKNNKTM AVCQNAKGSA TGCLKELACF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-78 | 43 | 410 | 371 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-83 | 45 | 396 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-89 | 43 | 410 | 376 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-127 | 70 | 400 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-127 | 43 | 402 | 362 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA46680.1 | 0 | 1 | 410 | 1 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 410 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001105862.1 | 0 | 1 | 410 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 1 | 410 | 1 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 1 | 410 | 1 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-19 | 116 | 401 | 57 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-19 | 116 | 401 | 57 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-19 | 116 | 401 | 57 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-19 | 116 | 401 | 57 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-19 | 116 | 401 | 57 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
