| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g024020.1 |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 42889.1 Isoelectric Point: 8.8816 |
| Chromosome | Chromosome/Scaffold: 10 Start: 52831381 End: 52832851 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 391 | 0 |
| TKACATPGRAAVVVPRGDYLLHPLVFRGPCKGYMEVHVAGVLRAPPGLAAFRGCREWVHFSSIDGLLVTGGGTFDGRGATAWPLNQCPQKRDCKLLPTSI KLGLVRNATITGVTSLDSKFFHVTVVGSHDVAIHRVSIRAPRSSPNTDGVHIQGSSNVRVTDSAVATGDDCVSVGPGASDVVVSGVSCGPGHGISVGSLG RYPGEEDVRRLRVANCTLAGTSNGVRIKTWRGGTWPTAVTGLVFEDIVMRKVHNPIIIDQEYCPYASCRESEQRPSAVRISDVKFRNIRGESATKVAVKL SCSEASPCRELELRDIDLRYVKRGVATQSRCAHVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MPLRFAAALL LLLATAASSW WFAEVAAAGR VFNVSDFGAV ADGRTDDSEA FLRAWTKACA 60 TPGRAAVVVP RGDYLLHPLV FRGPCKGYME VHVAGVLRAP PGLAAFRGCR EWVHFSSIDG 120 LLVTGGGTFD GRGATAWPLN QCPQKRDCKL LPTSIKLGLV RNATITGVTS LDSKFFHVTV 180 VGSHDVAIHR VSIRAPRSSP NTDGVHIQGS SNVRVTDSAV ATGDDCVSVG PGASDVVVSG 240 VSCGPGHGIS VGSLGRYPGE EDVRRLRVAN CTLAGTSNGV RIKTWRGGTW PTAVTGLVFE 300 DIVMRKVHNP IIIDQEYCPY ASCRESEQRP SAVRISDVKF RNIRGESATK VAVKLSCSEA 360 SPCRELELRD IDLRYVKRGV ATQSRCAHVA GGVVGGTLVP PSCI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-90 | 29 | 391 | 368 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-92 | 26 | 404 | 381 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-95 | 30 | 403 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-102 | 59 | 377 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-144 | 32 | 403 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85236.1 | 0 | 18 | 404 | 15 | 412 | polygalacturonase precursor [Oryza minuta] |
| GenBank | ACN85327.1 | 0 | 3 | 404 | 4 | 405 | polygalacturonase precursor [Oryza brachyantha] |
| RefSeq | NP_001058060.1 | 0 | 18 | 404 | 15 | 419 | Os06g0611400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152243.1 | 0 | 30 | 404 | 28 | 403 | polygalacturonase [Zea mays] |
| RefSeq | XP_002437276.1 | 0 | 1 | 404 | 1 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 107 | 373 | 97 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.000000000000001 | 23 | 371 | 12 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.0000000000002 | 102 | 392 | 49 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 102 | 392 | 49 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 102 | 392 | 49 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
