| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g026110.1 |
| Family | AA3 |
| Protein Properties | Length: 420 Molecular Weight: 45269.9 Isoelectric Point: 9.8502 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55456216 End: 55458724 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 52 | 414 | 8.40779e-45 |
| KVGATTFDASGRRRSAADLLAFARPSRLRVAVRATVTRIMTNPIDPAARRGRFPQPTIAAIGVVYQDHLLDQHQALLRPGGEVILSAGSLGSPQLLLLSG IGPAPDLSNLGIPVSADIPDVGKHMYDNPRNGISFIPSVPIDHSLIQVVGIPSANGTASYLEAASYIVPLAPELRSSSPFLGSSSPLYVTVATIMEKVPG PLSEGSLWLSSTNPLESPALRFNYLSRPEDLARCILGVRHVAEILEGRSLDGFRSAVGSTNRRGSVRRDFRIVGTALPVDWRTNDIALANYCQQTVATLW HYHGGCVAGKVVDRNFRVIGARAIRVVDASTFSETPGTNPQATILMMGRYVGLKMIEERHSRR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 420 Download |
| MPLVNASYEW VERLMTFQPA VHGWQAAVRA ALLEANVTPW NGFTVDHVTG TKVGATTFDA 60 SGRRRSAADL LAFARPSRLR VAVRATVTRI MTNPIDPAAR RGRFPQPTIA AIGVVYQDHL 120 LDQHQALLRP GGEVILSAGS LGSPQLLLLS GIGPAPDLSN LGIPVSADIP DVGKHMYDNP 180 RNGISFIPSV PIDHSLIQVV GIPSANGTAS YLEAASYIVP LAPELRSSSP FLGSSSPLYV 240 TVATIMEKVP GPLSEGSLWL SSTNPLESPA LRFNYLSRPE DLARCILGVR HVAEILEGRS 300 LDGFRSAVGS TNRRGSVRRD FRIVGTALPV DWRTNDIALA NYCQQTVATL WHYHGGCVAG 360 KVVDRNFRVI GARAIRVVDA STFSETPGTN PQATILMMGR YVGLKMIEER HSRRPVIPP* 420 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 8.0e-12 | 252 | 399 | 152 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 8.0e-15 | 244 | 416 | 178 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam05199 | GMC_oxred_C | 8.0e-24 | 252 | 399 | 153 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| PLN02785 | PLN02785 | 2.0e-94 | 3 | 413 | 445 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31582.1 | 0 | 1 | 419 | 169 | 591 | unknown [Zea mays] |
| DDBJ | BAD37565.1 | 0 | 1 | 416 | 169 | 582 | putative (R)-(+)-mandelonitrile lyase isoform MDL3 precursor [Oryza sativa Japonica Group] |
| GenBank | EAZ01933.1 | 0 | 99 | 416 | 119 | 434 | hypothetical protein OsI_23959 [Oryza sativa Indica Group] |
| GenBank | EAZ37866.1 | 0 | 1 | 416 | 68 | 481 | hypothetical protein OsJ_22211 [Oryza sativa Japonica Group] |
| RefSeq | XP_002437392.1 | 0 | 1 | 419 | 1 | 419 | hypothetical protein SORBIDRAFT_10g026110 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 1 | 410 | 131 | 517 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3gdp_A | 0 | 1 | 410 | 131 | 517 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3gdn_B | 0 | 1 | 410 | 131 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 1 | 410 | 131 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 1 | 410 | 131 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CF487990 | 197 | 1 | 197 | 0 |
| HO796743 | 444 | 3 | 413 | 0 |
| FS465759 | 236 | 156 | 391 | 0 |
| FD579520 | 257 | 129 | 383 | 0 |
| CX713218 | 234 | 178 | 410 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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