| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb10g030830.1 |
| Family | AA7 |
| Protein Properties | Length: 271 Molecular Weight: 28612.7 Isoelectric Point: 7.9669 |
| Chromosome | Chromosome/Scaffold: 10 Start: 60485830 End: 60493712 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 80 | 214 | 0 |
| TRPLVIVAATKPAHVQTTVLCGRRHSVHVRTRSGGHDHEGLSYASVDPHRRDFAVLDLAALRAIDMDASRAEAWVGSGATIGELYYAAAATNRTLGFPAG SCPTVGIGGHLSGGGFGVLSRKYGLSADNVLDAAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 271 Download |
| MARTPTTILH LLVTLVCILS TSARTSAYSS DVVVDAFLGC LSADIPPSLI YTPANNSYSS 60 VLLSSARNLR YALPEPDTCT RPLVIVAATK PAHVQTTVLC GRRHSVHVRT RSGGHDHEGL 120 SYASVDPHRR DFAVLDLAAL RAIDMDASRA EAWVGSGATI GELYYAAAAT NRTLGFPAGS 180 CPTVGIGGHL SGGGFGVLSR KYGLSADNVL DAAIAPALPR DLYLRVMVQN QQADFVAQFL 240 GRCSSLVDTM RGCQPCHPDL GVCKDPARFS * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 7.0e-8 | 61 | 212 | 153 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 7.0e-18 | 82 | 210 | 130 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001143977.1 | 0 | 8 | 217 | 4 | 211 | hypothetical protein LOC100276794 [Zea mays] |
| RefSeq | NP_001143977.1 | 0.0000008 | 213 | 264 | 276 | 324 | hypothetical protein LOC100276794 [Zea mays] |
| RefSeq | XP_002439064.1 | 0 | 1 | 270 | 1 | 270 | hypothetical protein SORBIDRAFT_10g030830 [Sorghum bicolor] |
| RefSeq | XP_002443690.1 | 0 | 47 | 205 | 16 | 183 | hypothetical protein SORBIDRAFT_07g000490 [Sorghum bicolor] |
| RefSeq | XP_002443690.1 | 0.000000000000003 | 213 | 264 | 260 | 308 | hypothetical protein SORBIDRAFT_07g000490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3tsj_B | 0 | 35 | 217 | 9 | 186 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
| PDB | 3tsj_B | 0.006 | 214 | 262 | 252 | 297 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
| PDB | 3tsj_A | 0 | 35 | 217 | 9 | 186 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
| PDB | 3tsj_A | 0.006 | 214 | 262 | 252 | 297 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
| PDB | 3tsh_A | 0 | 35 | 217 | 9 | 186 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
