| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si000491m |
| Family | GH17 |
| Protein Properties | Length: 709 Molecular Weight: 76154.6 Isoelectric Point: 6.2187 |
| Chromosome | Chromosome/Scaffold: 5 Start: 46081842 End: 46086319 |
| Description | RECA homolog 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 403 | 707 | 0 |
| IGVCYGVIGSGLPSKSDVVQLYKSNGIANMRFYFADQEVLNALRGSGISLALDVGNDKVGDLANDPAAAASWVKDNVQAYYPDVSIRYVVVGNEVDGAAS VLQAMKNVHDALTSANLAGSIKVSTAVKMDAIINSSPPSNGAFKDPSVMSPIVQFLAGNGAPLLANVYPYFAYKDNQNIDLNYALFEPSSTTVGDPNGLT YTNLFDAMVDAVHAALDKVGGGGVDVVVSESGWPSADGRGATVDNARTYNQNLINHAGKGTPRKPGPMEVYVFAMFNEDNKDGDPTEKKFGLFNPDKTPV YPINF | |||
| Full Sequence |
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| Protein Sequence Length: 709 Download |
| MQLDYESDPP LDGAKALEKE SSLNVAVSQL ASDFDRESNL CLERFSRTRR ASVISTGSLK 60 LDLALGIGGL PKGRMVEIFG KEASGKTTLA LHVVKEAQKN GGYCAYIDAE NAFNPSFAEA 120 IGVDSEKLLI AQPDSAENSL SIVNTLVGGS VAVVVVDSVA ALIPKCEMEG EIHMNSEDIQ 180 SRLMTRALRK IQYTLCRSES LIIFVNQVRT KLSSNQFPGI YKEVPCGGNA LGFYAAVRMR 240 TSRRELRYSE DQATGIALSV QIIKNKLAPA SLKEAGIDIR FGKGICHESE TLEMASSVGV 300 VVKDGSGYWI NGVFLPGKAE AEKFLLENAG VADEICNTVR NQFLQRESVC RGLPSLRPLC 360 TCTLASLSTL AEAAKFEQRS LLWWPCVRHK KKRAICSKRV RAIGVCYGVI GSGLPSKSDV 420 VQLYKSNGIA NMRFYFADQE VLNALRGSGI SLALDVGNDK VGDLANDPAA AASWVKDNVQ 480 AYYPDVSIRY VVVGNEVDGA ASVLQAMKNV HDALTSANLA GSIKVSTAVK MDAIINSSPP 540 SNGAFKDPSV MSPIVQFLAG NGAPLLANVY PYFAYKDNQN IDLNYALFEP SSTTVGDPNG 600 LTYTNLFDAM VDAVHAALDK VGGGGVDVVV SESGWPSADG RGATVDNART YNQNLINHAG 660 KGTPRKPGPM EVYVFAMFNE DNKDGDPTEK KFGLFNPDKT PVYPINFA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02012 | tigrfam_recA | 2.0e-82 | 18 | 340 | 328 | + protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage [DNA metabolism, DNA replication, recombination, and repair]. | ||
| pfam00154 | RecA | 3.0e-84 | 22 | 345 | 329 | + recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination. | ||
| PRK09354 | recA | 2.0e-94 | 18 | 348 | 339 | + recombinase A; Provisional | ||
| cd00983 | recA | 7.0e-108 | 18 | 344 | 330 | + RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-149 | 403 | 707 | 312 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003697 | single-stranded DNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005524 | ATP binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006281 | DNA repair |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK97761.1 | 0 | 375 | 684 | 1 | 312 | beta-1,3-glucanase [Sorghum bicolor] |
| GenBank | EEC72138.1 | 0 | 1 | 346 | 65 | 410 | hypothetical protein OsI_05156 [Oryza sativa Indica Group] |
| GenBank | EEE55988.1 | 0 | 1 | 346 | 47 | 392 | hypothetical protein OsJ_04733 [Oryza sativa Japonica Group] |
| RefSeq | NP_001143776.1 | 0 | 1 | 346 | 64 | 409 | hypothetical protein LOC100276540 [Zea mays] |
| RefSeq | XP_002459081.1 | 0 | 1 | 708 | 66 | 760 | hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 403 | 707 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 403 | 707 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 403 | 707 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 403 | 707 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 403 | 707 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO884376 | 300 | 47 | 346 | 0 |
| CA276169 | 263 | 413 | 673 | 0 |
| JK731426 | 328 | 19 | 345 | 0 |
| FE655325 | 208 | 401 | 606 | 0 |
| CN140635 | 222 | 400 | 620 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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