Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si000583m |
Family | CBM43 |
Protein Properties | Length: 666 Molecular Weight: 72053.4 Isoelectric Point: 8.3733 |
Chromosome | Chromosome/Scaffold: 5 Start: 36323322 End: 36326843 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 536 | 618 | 6e-33 |
WCIASANASETDLQNALNWACGPGNVDCSAIQPSQPCYQPDTLASHASYAFNSYYQQNGANVVACDFGGAGIRTTKDPSYDTC | |||
GH17 | 196 | 514 | 0 |
IGICYGRNADDLPGPDKVAQLIQQQSIKYVRIYDTNIDVIKAFANTGVELMVGVPNSDLLAFAQYQSNVDTWLKNSILPYYPATMITYITVGAEVTESPV NVSGLVVPAMRNVHTALKKAGLHKKITISSTHSLGILSRSFPPSAGAFNSSYAHFLKPLLEFLVENQAPFMVDLYPYYAYQNSPSNVSLNYALFSPQSQD VIDPNTGLVYSNMFDAQVDSIFFALMALNFKTLKIMVTESGWPNKGAAKETGATPDNAQTYNTNLIRHVVNDSGTPAKPGEEIDVYIFSLFNENRKPGIE SERNWGLFFPDQSSIYSLD |
Full Sequence |
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Protein Sequence Length: 666 Download |
MSSRKVIFYR VQDSIMPTDM WVRMCQCGPG PRESLPTSRH SSLPRFLLLG LPFLFCSGRE 60 PALFKRPQPH FITPRLASAP ATAVTQFTPP HCALALLHSL TGKHSSGSAS GCARQPCLYR 120 LCPHPLLLDS SSSLPNGRQR PQPCSHRRIA VLSAPRREAA AVPELGARSA MAGRLVLALP 180 VLLFLLLVGH CRGGKIGICY GRNADDLPGP DKVAQLIQQQ SIKYVRIYDT NIDVIKAFAN 240 TGVELMVGVP NSDLLAFAQY QSNVDTWLKN SILPYYPATM ITYITVGAEV TESPVNVSGL 300 VVPAMRNVHT ALKKAGLHKK ITISSTHSLG ILSRSFPPSA GAFNSSYAHF LKPLLEFLVE 360 NQAPFMVDLY PYYAYQNSPS NVSLNYALFS PQSQDVIDPN TGLVYSNMFD AQVDSIFFAL 420 MALNFKTLKI MVTESGWPNK GAAKETGATP DNAQTYNTNL IRHVVNDSGT PAKPGEEIDV 480 YIFSLFNENR KPGIESERNW GLFFPDQSSI YSLDWTGRGN VDVMTGANIT SANGTWCIAS 540 ANASETDLQN ALNWACGPGN VDCSAIQPSQ PCYQPDTLAS HASYAFNSYY QQNGANVVAC 600 DFGGAGIRTT KDPSYDTCVY LAAGKMSTMN STSLPARSGS SPNPSAKCVT SLLFMLAVAV 660 AAVML* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-5 | 194 | 506 | 326 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-22 | 535 | 607 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-41 | 535 | 620 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-111 | 196 | 514 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28065.1 | 0 | 171 | 665 | 1 | 496 | unknown [Zea mays] |
GenBank | EAZ13481.1 | 0 | 189 | 624 | 16 | 451 | hypothetical protein OsJ_03397 [Oryza sativa Japonica Group] |
GenBank | EEC71452.1 | 0 | 189 | 665 | 16 | 493 | hypothetical protein OsI_03677 [Oryza sativa Indica Group] |
RefSeq | NP_001044198.1 | 0 | 189 | 665 | 16 | 493 | Os01g0739700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002456331.1 | 0 | 171 | 665 | 1 | 497 | hypothetical protein SORBIDRAFT_03g034100 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 196 | 515 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 195 | 516 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 195 | 516 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 195 | 516 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 195 | 516 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL870821 | 265 | 334 | 598 | 0 |
EB663214 | 265 | 280 | 544 | 0 |
GT051468 | 281 | 347 | 627 | 0 |
DR946401 | 291 | 299 | 589 | 0 |
CO446305 | 278 | 249 | 526 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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