Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si000924m |
Family | GH14 |
Protein Properties | Length: 545 Molecular Weight: 59380.1 Isoelectric Point: 8.613 |
Chromosome | Chromosome/Scaffold: 5 Start: 302114 End: 306028 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 83 | 502 | 0 |
YVTLPADAVGPGGRVARRRAMGASLAALAAAGVAGVAVELWWGVVERQGPGEYDWAGYLDLAAMARHHGLRVRAILAFHQCGAGPHDPLWIPLPQWVLEE MDKVPDLSYTNRYQQRNKEYISLGCDSLPVLKGRSPMQAYSDFMRSFRNTFEDYLGAIVTEVQVGMGPGGELRYPSCPTEKLNQPGSSSELGEFQCYDKF MQASLSAHAQILGIQEWGSGGSTGTDGSQQNLEETSFFHADGGYWDTPYGRFFLEWYSGMLVLHGERLCMIADAIFSGTGVTISGKVAGIHWHYYTCAHP SELTAGYYNTLLRDGYLPIARMFAKYKAALCCGCFDLRDTERTNPESSPEGTLRQLVGAAKMCNLPLNGENSVTRLDDASLNQVIRSSRLYSGRSSGTSF SFNYVRMNKSLFEFHNWSRF |
Full Sequence |
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Protein Sequence Length: 545 Download |
MAAITAPPPP PPASTSCRLP RRGSLTRIAA SSSSPSSRFR PSSSRRTSSS TSFSGAGSSG 60 GGGEILHVPP PPPPAKPPGA PVYVTLPADA VGPGGRVARR RAMGASLAAL AAAGVAGVAV 120 ELWWGVVERQ GPGEYDWAGY LDLAAMARHH GLRVRAILAF HQCGAGPHDP LWIPLPQWVL 180 EEMDKVPDLS YTNRYQQRNK EYISLGCDSL PVLKGRSPMQ AYSDFMRSFR NTFEDYLGAI 240 VTEVQVGMGP GGELRYPSCP TEKLNQPGSS SELGEFQCYD KFMQASLSAH AQILGIQEWG 300 SGGSTGTDGS QQNLEETSFF HADGGYWDTP YGRFFLEWYS GMLVLHGERL CMIADAIFSG 360 TGVTISGKVA GIHWHYYTCA HPSELTAGYY NTLLRDGYLP IARMFAKYKA ALCCGCFDLR 420 DTERTNPESS PEGTLRQLVG AAKMCNLPLN GENSVTRLDD ASLNQVIRSS RLYSGRSSGT 480 SFSFNYVRMN KSLFEFHNWS RFTKFVRQMS DARTFLARLD VRRGQQYLSS MSVVWVVSRA 540 CAYT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02161 | PLN02161 | 8.0e-88 | 123 | 510 | 399 | + beta-amylase | ||
PLN02905 | PLN02905 | 7.0e-93 | 123 | 509 | 393 | + beta-amylase | ||
PLN02801 | PLN02801 | 2.0e-110 | 123 | 509 | 394 | + beta-amylase | ||
PLN00197 | PLN00197 | 3.0e-143 | 123 | 513 | 396 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-161 | 64 | 511 | 453 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD81275.1 | 0 | 82 | 542 | 106 | 566 | putative beta-amylase PCT-BMYI [Oryza sativa Japonica Group] |
DDBJ | BAH90978.1 | 0 | 82 | 531 | 106 | 555 | Os01g0236800 [Oryza sativa Japonica Group] |
RefSeq | NP_001130896.1 | 0 | 64 | 544 | 59 | 539 | hypothetical protein LOC100192000 [Zea mays] |
RefSeq | NP_001132696.1 | 0 | 1 | 544 | 1 | 537 | hypothetical protein LOC100194176 [Zea mays] |
RefSeq | XP_002454872.1 | 0 | 103 | 544 | 1 | 442 | hypothetical protein SORBIDRAFT_03g000480 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1b1y_A | 0 | 82 | 509 | 8 | 435 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 1fa2_A | 0 | 71 | 509 | 2 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 2xgi_A | 0 | 82 | 509 | 12 | 439 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 2xgb_A | 0 | 82 | 509 | 12 | 439 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 2xg9_A | 0 | 82 | 509 | 12 | 439 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL772856 | 257 | 176 | 432 | 0 |
FL775529 | 254 | 176 | 429 | 0 |
FL861991 | 244 | 123 | 366 | 0 |
FL977902 | 267 | 161 | 398 | 0 |
GR334835 | 245 | 123 | 367 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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