| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si000958m |
| Family | GH28 |
| Protein Properties | Length: 539 Molecular Weight: 57781.4 Isoelectric Point: 7.8694 |
| Chromosome | Chromosome/Scaffold: 5 Start: 30251555 End: 30255854 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 164 | 491 | 0 |
| AAACKQGASTVLVPPELEFLVGPISFSGPYCKPNIVFQLEGTILAPTSAKAWGSGLLQWLEFTKLNGIVIQGNGIINGRGQQWWTYADLEDEDEDDTYDV EFETMPHIKPTALRFYGSFNVLVAGITIVNSSQCHLKFDNCQGVMVHDVTISSPENSLNTDGIHLQNSKDVSIHHTNMACGDDCISIQTGCSNINIHNVN CGPGHGISIGGLGRDNTKACVSNVTVRDVNMLRTMNGVRIKTWQGGVGLVQDIRFSNIQVTEVQTPIIIDQFYCDKSTCRNQTSAVGVSGVQYENIRGTF TIKPVHFACSDSLPCSGISLTGVQLRPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 539 Download |
| MKLRAKGLGL LLLLVLLALC STIDVGEARR GKHWRPRSSP SSSQLKKGKG KKSTSHRQHG 60 SNRPSPKPPV SSTPSPGAGK GNQNPYQPSP TPSAPVSPTP GPANDSRHSS PKPPTPSCGK 120 GHQQTSQPPP LPPASQGEVF NVVDFGAKGD GVTDDTKAFE GAWAAACKQG ASTVLVPPEL 180 EFLVGPISFS GPYCKPNIVF QLEGTILAPT SAKAWGSGLL QWLEFTKLNG IVIQGNGIIN 240 GRGQQWWTYA DLEDEDEDDT YDVEFETMPH IKPTALRFYG SFNVLVAGIT IVNSSQCHLK 300 FDNCQGVMVH DVTISSPENS LNTDGIHLQN SKDVSIHHTN MACGDDCISI QTGCSNINIH 360 NVNCGPGHGI SIGGLGRDNT KACVSNVTVR DVNMLRTMNG VRIKTWQGGV GLVQDIRFSN 420 IQVTEVQTPI IIDQFYCDKS TCRNQTSAVG VSGVQYENIR GTFTIKPVHF ACSDSLPCSG 480 ISLTGVQLRP VQVPHYHLNN PFCWQAFGEL YTPTVPPIAC LQLGKPAGNN LQTYNDIC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-63 | 137 | 488 | 357 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-65 | 140 | 489 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-67 | 167 | 488 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-69 | 141 | 489 | 354 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-85 | 126 | 521 | 400 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN35722.1 | 0 | 1 | 538 | 1 | 541 | unknown [Zea mays] |
| RefSeq | NP_001043666.1 | 0 | 20 | 538 | 20 | 538 | Os01g0636500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148771.1 | 0 | 1 | 538 | 1 | 541 | polygalacturonase [Zea mays] |
| RefSeq | NP_001150912.1 | 0 | 20 | 538 | 20 | 536 | polygalacturonase [Zea mays] |
| RefSeq | XP_002456022.1 | 0 | 1 | 538 | 1 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-25 | 233 | 439 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-17 | 231 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-17 | 231 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-17 | 231 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-17 | 231 | 488 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
