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Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si001228m |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 50917.8 Isoelectric Point: 6.7774 |
Chromosome | Chromosome/Scaffold: 5 Start: 2816015 End: 2818120 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 113 | 455 | 0 |
WDTACADDGDGVVLARAGYSFLVHTTVFTGPCQGSVTIQLDGTMVAPSDPDKWPANNKRNWLVFYNAHGTTLRGAGLIDGKGQNWWELPCKVHKGQGGSS GHGTSCDSPVMLRFFTSNNVTVQGLKVQNSPEFHFRFDSCRGVHVSGLSISSPQGSPNTDGIHVENTQDVLITDTAVSNGDDCVSIGAGTLNVHIENVTC GLGHGISIGSLGKQGTRACVANITVRNAVIRHSDNGVRIKTWQGGSGSVSSVSFENVRMDAVRNPIIIDQYYCLSKSCENATTAVFVSGVSYAGIRGTYD ARSAPIHFGCSDAVPCTNITLSDVELLPASGQTVDDPFCWNVY |
Full Sequence |
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Protein Sequence Length: 487 Download |
MEVAARTAIA LLLALAVLCG GAQGRHHRHT KHTRHNSAHA HAPSHSQAPG PSSARRHARP 60 VSPPAPPPSS YPAPEPAPEP ASGGAAAVYD VVKDFGAVGD GVADDTDAIK TAWDTACADD 120 GDGVVLARAG YSFLVHTTVF TGPCQGSVTI QLDGTMVAPS DPDKWPANNK RNWLVFYNAH 180 GTTLRGAGLI DGKGQNWWEL PCKVHKGQGG SSGHGTSCDS PVMLRFFTSN NVTVQGLKVQ 240 NSPEFHFRFD SCRGVHVSGL SISSPQGSPN TDGIHVENTQ DVLITDTAVS NGDDCVSIGA 300 GTLNVHIENV TCGLGHGISI GSLGKQGTRA CVANITVRNA VIRHSDNGVR IKTWQGGSGS 360 VSSVSFENVR MDAVRNPIII DQYYCLSKSC ENATTAVFVS GVSYAGIRGT YDARSAPIHF 420 GCSDAVPCTN ITLSDVELLP ASGQTVDDPF CWNVYGNATT PTVPPVACLM DGVPGNYADH 480 TSLKCY* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-60 | 111 | 465 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 9.0e-64 | 112 | 469 | 364 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 9.0e-67 | 110 | 438 | 331 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-70 | 133 | 438 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-95 | 110 | 471 | 364 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD86981.1 | 0 | 88 | 486 | 17 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAY73623.1 | 0 | 21 | 486 | 30 | 503 | hypothetical protein OsI_01510 [Oryza sativa Indica Group] |
RefSeq | NP_001042805.1 | 0 | 21 | 486 | 30 | 503 | Os01g0296200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150436.1 | 0 | 1 | 486 | 1 | 499 | polygalacturonase [Zea mays] |
RefSeq | XP_002455500.1 | 0 | 1 | 486 | 1 | 506 | hypothetical protein SORBIDRAFT_03g012280 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-25 | 183 | 454 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-25 | 183 | 454 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-25 | 183 | 454 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-25 | 183 | 454 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-25 | 183 | 454 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |