| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si001461m |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 46785.8 Isoelectric Point: 7.3934 |
| Chromosome | Chromosome/Scaffold: 5 Start: 29059328 End: 29062295 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 416 | 0 |
| GGAELYVPPGVWLTGPFNLTSRMTLFLARGAVIRATQDTPSWPLIGPLPSYGRGRELPGGRYISLIHGSGLQDVVITGENGTIDGQGSVWWDMWKKGTLP YTRPHLLELMSSSGIIVSNIVFQDSPFWNIHPVYCSNVVIRNVTVLAPHDSPNTDGIDPDSSSNVCIEDCYISTGDDAVAIKSGWDEYGIAYGRPSSDIT VRRITGSSPFAGFAVGSETSGGVQNVLAEHLNFFSSGFGIHIKTNTGRGGFIRNITVSDVTLDNVRYGLRITGDVGDHPDDSYNRSALPVVDTLTIKNVQ GQNIREAGLIKGITNSAFSRICLSNVKLSGGTPVRPWKCEAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MARRCPCGLL LALALAAALS AAGAQETCSG AVPAPPRRGA RVSVASFGGA GDGRTLNTGA 60 FARAVASIDR LRAPGGAELY VPPGVWLTGP FNLTSRMTLF LARGAVIRAT QDTPSWPLIG 120 PLPSYGRGRE LPGGRYISLI HGSGLQDVVI TGENGTIDGQ GSVWWDMWKK GTLPYTRPHL 180 LELMSSSGII VSNIVFQDSP FWNIHPVYCS NVVIRNVTVL APHDSPNTDG IDPDSSSNVC 240 IEDCYISTGD DAVAIKSGWD EYGIAYGRPS SDITVRRITG SSPFAGFAVG SETSGGVQNV 300 LAEHLNFFSS GFGIHIKTNT GRGGFIRNIT VSDVTLDNVR YGLRITGDVG DHPDDSYNRS 360 ALPVVDTLTI KNVQGQNIRE AGLIKGITNS AFSRICLSNV KLSGGTPVRP WKCEAVTGGA 420 LDVQPSPCTE LTSTSGTSFC TNSL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-26 | 39 | 340 | 313 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-26 | 32 | 406 | 392 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-32 | 42 | 433 | 405 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-37 | 140 | 420 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-60 | 42 | 366 | 357 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY74990.1 | 0 | 26 | 444 | 26 | 445 | hypothetical protein OsI_02888 [Oryza sativa Indica Group] |
| GenBank | EAY99223.1 | 0 | 25 | 442 | 34 | 448 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 25 | 442 | 34 | 448 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141464.1 | 0 | 1 | 444 | 1 | 446 | hypothetical protein LOC100273574 [Zea mays] |
| RefSeq | XP_002455965.1 | 0 | 1 | 444 | 1 | 447 | hypothetical protein SORBIDRAFT_03g028140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 21 | 406 | 7 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 21 | 406 | 7 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 21 | 406 | 7 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 21 | 406 | 7 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-19 | 85 | 416 | 51 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
