Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si001579m |
Family | GT47 |
Protein Properties | Length: 423 Molecular Weight: 47657.8 Isoelectric Point: 6.8327 |
Chromosome | Chromosome/Scaffold: 5 Start: 45401432 End: 45405179 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 55 | 350 | 0 |
KLKVFVYEMPRKYNLMLLAKDSRCLHHMFAAEIFMHQFLLNSAVRTLDPEEADWFYTPAYTTCDLTPQGFPLPFRAPRIMRSAIKYVATTWPYWNRTEGA DHFFLTPHDFGACFHYQEERAMERGILPLLRRATLVQTFGQRNHVCLQDGSITIPPYANPHKMQAHLINPGTPRSIFVYFRGLFYDMGNDPEGGYYARGA RASVWENFKDNPLFDISTEHPSTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEISVFVAERDVPRLDNILTSI |
Full Sequence |
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Protein Sequence Length: 423 Download |
MGRDRRPWPA AAAAAAVLLV VSCVAAAAPP QRQQHERARI SGAAGGVLDD NPVGKLKVFV 60 YEMPRKYNLM LLAKDSRCLH HMFAAEIFMH QFLLNSAVRT LDPEEADWFY TPAYTTCDLT 120 PQGFPLPFRA PRIMRSAIKY VATTWPYWNR TEGADHFFLT PHDFGACFHY QEERAMERGI 180 LPLLRRATLV QTFGQRNHVC LQDGSITIPP YANPHKMQAH LINPGTPRSI FVYFRGLFYD 240 MGNDPEGGYY ARGARASVWE NFKDNPLFDI STEHPSTYYE DMQRAIFCLC PLGWAPWSPR 300 LVEAVVFGCI PVIIADDIVL PFADAIPWEE ISVFVAERDV PRLDNILTSI PLEDILRKQR 360 LLAGASVKQA LLFHQPARPG DAFDQILNGL ARKLPHGKGV FLEPGEKVLD WDAGLENDLK 420 PW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-84 | 55 | 350 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG43504.1 | 0 | 34 | 422 | 32 | 420 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
GenBank | ACN31576.1 | 0 | 14 | 422 | 5 | 412 | unknown [Zea mays] |
GenBank | ACR34554.1 | 0 | 14 | 422 | 5 | 412 | unknown [Zea mays] |
RefSeq | NP_001045262.1 | 0 | 33 | 422 | 35 | 422 | Os01g0926400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459015.1 | 0 | 9 | 422 | 3 | 415 | hypothetical protein SORBIDRAFT_03g044510 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |