| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si001596m |
| Family | GT30 |
| Protein Properties | Length: 421 Molecular Weight: 46249.4 Isoelectric Point: 9.7186 |
| Chromosome | Chromosome/Scaffold: 5 Start: 41910562 End: 41915433 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 46 | 227 | 0 |
| RWPERLGRPSAARPRPGSPLVWFHAVSLGEGMAALPVVRHCARLHPGLPVLLTTTTLSSFEVIKDLLPEGVIYQFAPLDCPDAIDSFIGYWKPSLVLLME SELWPNLIMSAAANGIAVALLNARMSLKSFNRWSVPLGLPLVTLMLSKLSLVAPLSTIQAVRFQLLHTPPGIIHFAGDLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 421 Download |
| MPMRPARAPA PAAARGLYEL YRAASRAAAP AVLLWRRLQG LEHPTRWPER LGRPSAARPR 60 PGSPLVWFHA VSLGEGMAAL PVVRHCARLH PGLPVLLTTT TLSSFEVIKD LLPEGVIYQF 120 APLDCPDAID SFIGYWKPSL VLLMESELWP NLIMSAAANG IAVALLNARM SLKSFNRWSV 180 PLGLPLVTLM LSKLSLVAPL STIQAVRFQL LHTPPGIIHF AGDLKYAVGD VNAGENEVIK 240 IKDLQQQFSN RPLWMAASIH RGEEEVILRV HDELIKMYPT LLLILVPRHP HDCKDFSLVL 300 KKQKANFVLR STKEVVCSST RVYMVDTLGE LRMLYRVTPV AVVGGSFLPG LAGHNISEAA 360 AAGCAVMTGP HVGHFYHMLL EMWQINPLAV KQVTSSAALY SLAKQSIISR DSNYCTPFAF 420 * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 2.0e-48 | 43 | 228 | 186 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 1.0e-91 | 33 | 399 | 371 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 7.0e-97 | 33 | 399 | 371 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 18 | 399 | 8 | 390 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| GenBank | ACN31913.1 | 0 | 3 | 405 | 1 | 402 | unknown [Zea mays] |
| GenBank | EEC71834.1 | 0 | 3 | 405 | 1 | 405 | hypothetical protein OsI_04493 [Oryza sativa Indica Group] |
| RefSeq | XP_002458792.1 | 0 | 3 | 405 | 1 | 405 | hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor] |
| RefSeq | XP_002528642.1 | 0 | 12 | 399 | 6 | 395 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 3e-22 | 66 | 371 | 43 | 310 | A Chain A, Peanut Peroxidase |
| PDB | 2xcu_C | 3e-22 | 66 | 371 | 43 | 310 | A Chain A, Peanut Peroxidase |
| PDB | 2xcu_B | 3e-22 | 66 | 371 | 43 | 310 | A Chain A, Peanut Peroxidase |
| PDB | 2xcu_A | 3e-22 | 66 | 371 | 43 | 310 | A Chain A, Peanut Peroxidase |
| PDB | 2xci_D | 3e-22 | 66 | 371 | 43 | 310 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB675948 | 269 | 16 | 284 | 0 |
| FE616521 | 217 | 137 | 352 | 0 |
| DY279419 | 319 | 35 | 353 | 0 |
| FE616521 | 25 | 353 | 377 | 6 |
| DY279419 | 56 | 347 | 402 | 7.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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