y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si003853m |
Family | GH28 |
Protein Properties | Length: 416 Molecular Weight: 45586.6 Isoelectric Point: 5.2464 |
Chromosome | Chromosome/Scaffold: 5 Start: 41605233 End: 41608670 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 394 | 0 |
EACNASDYRSVFLVPEGKTYLLTPVSFRGPCRASSITAMIKGTLEAPSNRSVWLDHDLQDWITFEGIDRLRVLGGGTLNGNGQQWWINSCKFNTSMPCVT GPTALYFRRCTHLIVEDLEVRDSMQMHVAIAYSWKVLISKLFLTAPGWSPNTDGIHVSNSKEVSISDCSISTGDDCISIVTGSMFVRVTDIFCGPGHGIS IGSLGANSSWAHVSDVLVEKATLLGTTNGVRIKTWQGGHGYAERITFQDISMNNVTNPIIIDQNYCDSKKRCDEQESAVAVRDIRYRNIHGTSASKVAVS FICSGAVRCDGILVQDIYLVGEGRYATC |
Full Sequence |
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Protein Sequence Length: 416 Download |
MSIFPRMLLN LANSEKIFPE AEGPTAESSD ELWLRSRQPP RVVDVDDYGA EANGCNDTEA 60 FLAAWREACN ASDYRSVFLV PEGKTYLLTP VSFRGPCRAS SITAMIKGTL EAPSNRSVWL 120 DHDLQDWITF EGIDRLRVLG GGTLNGNGQQ WWINSCKFNT SMPCVTGPTA LYFRRCTHLI 180 VEDLEVRDSM QMHVAIAYSW KVLISKLFLT APGWSPNTDG IHVSNSKEVS ISDCSISTGD 240 DCISIVTGSM FVRVTDIFCG PGHGISIGSL GANSSWAHVS DVLVEKATLL GTTNGVRIKT 300 WQGGHGYAER ITFQDISMNN VTNPIIIDQN YCDSKKRCDE QESAVAVRDI RYRNIHGTSA 360 SKVAVSFICS GAVRCDGILV QDIYLVGEGR YATCSYTNAT IVQLGYSFPF CSAEM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-84 | 43 | 409 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-87 | 44 | 396 | 357 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-94 | 76 | 396 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-115 | 28 | 412 | 388 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-122 | 32 | 385 | 362 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53778.1 | 0 | 7 | 415 | 21 | 437 | unknown [Zea mays] |
GenBank | EAZ26072.1 | 0 | 19 | 415 | 39 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
RefSeq | NP_001049387.1 | 0 | 19 | 415 | 39 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150245.1 | 0 | 15 | 415 | 29 | 437 | polygalacturonase [Zea mays] |
RefSeq | XP_002468269.1 | 0 | 19 | 415 | 1 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 3e-19 | 78 | 396 | 26 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_B | 0.000000000000001 | 128 | 395 | 67 | 331 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_A | 0.000000000000001 | 128 | 395 | 67 | 331 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ia5_A | 0.000000000000001 | 128 | 395 | 67 | 331 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000000000001 | 138 | 331 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BQ840584 | 223 | 60 | 281 | 0 |
EE041953 | 244 | 7 | 247 | 0 |
EE012525 | 221 | 7 | 224 | 0 |
EC945774 | 233 | 154 | 386 | 0 |
EE091344 | 230 | 154 | 383 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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