Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si003854m |
Family | GH28 |
Protein Properties | Length: 417 Molecular Weight: 43759.8 Isoelectric Point: 8.9364 |
Chromosome | Chromosome/Scaffold: 5 Start: 25421743 End: 25423723 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 369 | 0 |
WQAACRVPRATVLLPSGHRFLVSPVTLQGPCSARLTLQPRRPLQWLNFKWLNGFTIQGAGTVDGQSITSLQNSSPANAPQRSTGHWHSSGAKPTLVRFYS SFNVTVRNIRISNSPQCHLKFDSSGSIKVKNVTISSPGDSLNTDGIHLQNTRDVEIRSSSIGCGDDCVSIQTGCSNVHMKNVVCNPGHGISVGGLGKDNS LACVSDVVAENINVQNALYAVRIKTWQGGVGSVRNITFSNVRVANVATPIAIDQFYCDRGGARCANRTGAVAIAGVAYRRVVGTYSFQPARLACSDARPC TGVTMVDVRLSPAA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MWSSVVSVAF LAATLLCLAL PAPAVAAARS TTLSVLSFGA AADGVTDDAE ALVAAWQAAC 60 RVPRATVLLP SGHRFLVSPV TLQGPCSARL TLQPRRPLQW LNFKWLNGFT IQGAGTVDGQ 120 SITSLQNSSP ANAPQRSTGH WHSSGAKPTL VRFYSSFNVT VRNIRISNSP QCHLKFDSSG 180 SIKVKNVTIS SPGDSLNTDG IHLQNTRDVE IRSSSIGCGD DCVSIQTGCS NVHMKNVVCN 240 PGHGISVGGL GKDNSLACVS DVVAENINVQ NALYAVRIKT WQGGVGSVRN ITFSNVRVAN 300 VATPIAIDQF YCDRGGARCA NRTGAVAIAG VAYRRVVGTY SFQPARLACS DARPCTGVTM 360 VDVRLSPAAG APGTVAPLCW NSYGEARGTM EPLGVGCLQR SNGYAMPLTQ PFNYTC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-63 | 30 | 392 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-65 | 30 | 401 | 390 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-66 | 65 | 366 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-79 | 31 | 379 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-91 | 33 | 392 | 377 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD88046.1 | 0 | 10 | 416 | 2 | 372 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAY74476.1 | 0 | 10 | 416 | 2 | 382 | hypothetical protein OsI_02367 [Oryza sativa Indica Group] |
RefSeq | NP_189293.1 | 0 | 21 | 416 | 54 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 416 | 78 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002457998.1 | 0 | 22 | 416 | 21 | 420 | hypothetical protein SORBIDRAFT_03g025260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-21 | 32 | 384 | 20 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-19 | 111 | 366 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000001 | 141 | 339 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000001 | 141 | 339 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000001 | 141 | 339 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |