| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004128m |
| Family | GH28 |
| Protein Properties | Length: 792 Molecular Weight: 83239 Isoelectric Point: 9.2162 |
| Chromosome | Chromosome/Scaffold: 5 Start: 14193198 End: 14196272 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 386 | 742 | 0 |
| NASTTATLLVPPDGVFTITSTIFAGPCKSGLIFQIDGVLMPPDGPASWPATDSRRQWIVFYKADGMTLAGKGTIEGNGEEWWDLPCKPHRGPNGSTLPGP CDSPAVSSPKTTTWTWISLFLFVEFPGLTLFVCISQLIRFFLSNGVTVSGLRIENSPQFHLKFDDCVGVLVDGLFVSSPAFSPNTDGVHVENTTAVQIIN SRIYNGDDCVSIGAGCSDVHIENITCGHGHGISIGSLGVHNTRACVSNVTVRNARILDSDNGLRIKTWQGGAGAVSGVEFDGVRVQNVKNCIVIDQYYCL GSGCANQTSAVRVAGVAYRDIRGTYNPRGGAPIRLACSDAVACTGITMSGVELLPAG | |||
| Full Sequence |
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| Protein Sequence Length: 792 Download |
| MEKLERKKVA TPALLILILE EPEPCKRPWN QLEAGSIGAA AISHDWFHHC NLKFSPHIRA 60 KDHIQVHWSV YCTPYCSSML CLPVAADASR ALHYHRKHRR HHRRHRASEN SSHISVPPAA 120 LPPGVDGDSP AEPPIAPAPA PAKPPPAFSS AKPPSAERAK APTHSHAKPP SLPPAKPPNF 180 SLAKPPSPSP AKAPSRSHAK PPSSLSPARP PSPSPRKAPA PTFFPSKPPS LPPSHAKPTP 240 CTPAKAPLAQ PPRLAPARPP MPSPARPPPF SPASPPAHPP AKPSKRAPAQ TPRLAPAKPP 300 TPSLSPAQSP RPSPANPPAA STVPAKPPAF PPAMSKPIPP PPPPAKNSSS ACANVFDVRA 360 FGASGNGSSD DTRAFRAAWK AACSSNASTT ATLLVPPDGV FTITSTIFAG PCKSGLIFQI 420 DGVLMPPDGP ASWPATDSRR QWIVFYKADG MTLAGKGTIE GNGEEWWDLP CKPHRGPNGS 480 TLPGPCDSPA VSSPKTTTWT WISLFLFVEF PGLTLFVCIS QLIRFFLSNG VTVSGLRIEN 540 SPQFHLKFDD CVGVLVDGLF VSSPAFSPNT DGVHVENTTA VQIINSRIYN GDDCVSIGAG 600 CSDVHIENIT CGHGHGISIG SLGVHNTRAC VSNVTVRNAR ILDSDNGLRI KTWQGGAGAV 660 SGVEFDGVRV QNVKNCIVID QYYCLGSGCA NQTSAVRVAG VAYRDIRGTY NPRGGAPIRL 720 ACSDAVACTG ITMSGVELLP AGSGAGAGAG ARLADPYCWN AYGLMETLTL PPVYCLQEGR 780 PESLQDQLTS C* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 7.0e-53 | 354 | 777 | 428 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 6.0e-53 | 356 | 738 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-69 | 358 | 738 | 385 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-77 | 393 | 738 | 346 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-82 | 355 | 772 | 419 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001132604.2 | 0.000004 | 78 | 150 | 33 | 95 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | NP_001132604.2 | 0 | 329 | 791 | 69 | 502 | hypothetical protein LOC100194076 [Zea mays] |
| RefSeq | XP_002455572.1 | 0 | 78 | 791 | 2 | 693 | hypothetical protein SORBIDRAFT_03g013310 [Sorghum bicolor] |
| RefSeq | XP_002455574.1 | 0 | 331 | 791 | 79 | 548 | hypothetical protein SORBIDRAFT_03g013330 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 5e-22 | 524 | 745 | 101 | 337 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-22 | 524 | 745 | 101 | 337 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-22 | 524 | 745 | 101 | 337 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 5e-22 | 524 | 745 | 101 | 337 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 5e-22 | 524 | 745 | 101 | 337 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EY254539 | 330 | 432 | 761 | 0 |
| DW479564 | 357 | 363 | 719 | 0 |
| DY277859 | 373 | 355 | 727 | 0 |
| DV135481 | 321 | 365 | 685 | 0 |
| ES849368 | 326 | 405 | 729 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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