| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004466m |
| Family | PL1 |
| Protein Properties | Length: 366 Molecular Weight: 40059.7 Isoelectric Point: 6.1888 |
| Chromosome | Chromosome/Scaffold: 5 Start: 40909984 End: 40911359 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 80 | 260 | 0 |
| IVFDVSGTIHLSSGVRVSSYKTLDGRGRRVRLSGAGLELRRCEHVIVCALEVEGGRGHDADAVQIKPRSRHVWVDRCSLRDFADGLVDVTGGSTDVTVSR CHLASHDKAVLVGASSAHVEDRRIRVTIHHCFFDGTRQRHPRVRFGRVHLYNNYTRGWGIYAVCASVEAQIISQCNIYEAE | |||
| Full Sequence |
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| Protein Sequence Length: 366 Download |
| MAPPPSDGQL RSEPTMEDAR SLLPYTTVDS SLRALAGQAE GFGRHAIGGL HGDVYHVTTL 60 EDDGPGSLRE GCRRHEPLWI VFDVSGTIHL SSGVRVSSYK TLDGRGRRVR LSGAGLELRR 120 CEHVIVCALE VEGGRGHDAD AVQIKPRSRH VWVDRCSLRD FADGLVDVTG GSTDVTVSRC 180 HLASHDKAVL VGASSAHVED RRIRVTIHHC FFDGTRQRHP RVRFGRVHLY NNYTRGWGIY 240 AVCASVEAQI ISQCNIYEAE RKKEVFRYME EQAADSDQSS SGHIRSEGDL FLNGAQQCAA 300 DASDAPGDEL WDFKVQDFYQ SCSVQPTSMA LKMLLQCCTG WQPVPLPADV SSSTQDDVDP 360 ADPAA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 5.0e-24 | 81 | 255 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 7.0e-33 | 48 | 297 | 269 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-50 | 83 | 261 | 191 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD73403.1 | 0 | 1 | 365 | 1 | 343 | putative pectate lyase [Oryza sativa Japonica Group] |
| EMBL | CBI32661.1 | 0 | 21 | 349 | 2 | 324 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY76417.1 | 0 | 60 | 365 | 1 | 308 | hypothetical protein OsI_04348 [Oryza sativa Indica Group] |
| RefSeq | XP_002277576.1 | 0 | 15 | 349 | 40 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002456600.1 | 0 | 1 | 365 | 1 | 364 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2.00386e-43 | 29 | 295 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2.00386e-43 | 29 | 295 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-22 | 46 | 257 | 21 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-21 | 94 | 257 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-16 | 101 | 258 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 328 | 23 | 350 | 0 |
| DY289690 | 288 | 8 | 295 | 0 |
| DY271752 | 282 | 9 | 290 | 0 |
| JG177860 | 309 | 40 | 347 | 0 |
| DW066041 | 305 | 44 | 348 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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