y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si004468m |
Family | GT8 |
Protein Properties | Length: 621 Molecular Weight: 68344.2 Isoelectric Point: 6.9122 |
Chromosome | Chromosome/Scaffold: 5 Start: 41769190 End: 41771052 |
Description | plant glycogenin-like starch initiation protein 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 325 | 536 | 2.6e-39 |
QAYVTVLHSADAYVCGAIALAQSIRQSGSTRDLVALVDAENVGAEHRAALATAGWQVRPAPRIRNPRAARDTYNEWNYSKFRLWQLTHYDKVVFLDADLL VLRDMDFLFEEASELSATVNSGVRFNSGVMVLEPCNCTFELLMSGIHDIDSYNGGDQGYLNEVFTWWHRLPRRANFLKYVWAEEVRTAQARVLSAEPAEV HAVHYLGIKPWL |
Full Sequence |
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Protein Sequence Length: 621 Download |
MNGGVRKKSG IYKLLVIFLF FGCAIVALLV RGNGGCCVVV QLAVLPRAIP VSLGDAPPAA 60 RVSSSTPSGE IPTTSSEAPS SSPHDRQESE AVAASEEGEV FSARPYAADS EWDIQWESVA 120 RSLSSSSGND DTGSGIVRVG LLNFNSSEVA RWRSTLPAAD VRAVSLAPAA DAVTWEALYP 180 NWVDEDSNRS SCPSLPDPDP AVHDFDLVAV KLPCRRQGWS RDVRRLHLQL SAAKLALHGS 240 SSSTPKAGMV LILSEPKCLP LPNLFPCKHL LSRHAHAWLY SPDAAYLRHR LDLPVGSCQL 300 AVPSLRPPPP GQPGATPPRS SIGRQAYVTV LHSADAYVCG AIALAQSIRQ SGSTRDLVAL 360 VDAENVGAEH RAALATAGWQ VRPAPRIRNP RAARDTYNEW NYSKFRLWQL THYDKVVFLD 420 ADLLVLRDMD FLFEEASELS ATVNSGVRFN SGVMVLEPCN CTFELLMSGI HDIDSYNGGD 480 QGYLNEVFTW WHRLPRRANF LKYVWAEEVR TAQARVLSAE PAEVHAVHYL GIKPWLCYRD 540 YDCNWNVPAL RQFASDEAHA RWWAVHDRIE PPELRDRFCA LGESQVAMLE QHRRDAATVN 600 ASDGHWNRTI TDPRRLIKAN * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00176 | PLN00176 | 7.0e-11 | 322 | 535 | 258 | + galactinol synthase | ||
cd00505 | Glyco_transf_8 | 2.0e-11 | 325 | 535 | 254 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
cd06914 | GT8_GNT1 | 2.0e-13 | 326 | 489 | 173 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 4.0e-35 | 328 | 538 | 253 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 1.0e-69 | 325 | 567 | 252 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS90653.1 | 0 | 113 | 617 | 146 | 638 | putative glycogenin [Oryza sativa Japonica Group] |
GenBank | EEC79261.1 | 0 | 113 | 617 | 146 | 638 | hypothetical protein OsI_20036 [Oryza sativa Indica Group] |
GenBank | EEE63788.1 | 0 | 78 | 617 | 125 | 651 | hypothetical protein OsJ_18611 [Oryza sativa Japonica Group] |
RefSeq | NP_001044991.1 | 0 | 114 | 614 | 106 | 594 | Os01g0880200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458785.1 | 0 | 1 | 620 | 1 | 626 | hypothetical protein SORBIDRAFT_03g040240 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2w_B | 1e-21 | 321 | 535 | 1 | 221 | A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium Oleispira Antarctica |
PDB | 3u2w_A | 1e-21 | 321 | 535 | 1 | 221 | A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium Oleispira Antarctica |
PDB | 3qvb_A | 1e-21 | 321 | 535 | 1 | 221 | A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium Oleispira Antarctica |
PDB | 3q4s_A | 1e-21 | 321 | 535 | 1 | 221 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |
PDB | 1zcv_A | 1e-21 | 314 | 597 | 13 | 300 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |