| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004722m |
| Family | CE8 |
| Protein Properties | Length: 180 Molecular Weight: 19242 Isoelectric Point: 10.7549 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2316957 End: 2317496 |
| Description | pectin methylesterase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 100 | 180 | 1.8e-26 |
| AVVAKDGSGNFTTVAAAVAAAPTNSRRRYVIYIKAGAYIENVDVGKKHVNLMFVGDGIGKTVIKGSRNVIDGSTTFRSATV | |||
| Full Sequence |
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| Protein Sequence Length: 180 Download |
| YTCLDGFAYQ NGGRMRRYIE PTLYHVSRMV SNSLAMAKKL PGAPSPSPSS AQAETKTEAT 60 AAPRQPFVGY GQMVKGFPRW VRPGDRRLLQ APASGIKADA VVAKDGSGNF TTVAAAVAAA 120 PTNSRRRYVI YIKAGAYIEN VDVGKKHVNL MFVGDGIGKT VIKGSRNVID GSTTFRSATV 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01095 | Pectinesterase | 2.0e-36 | 99 | 180 | 82 | + Pectinesterase. | ||
| PLN02933 | PLN02933 | 2.0e-36 | 2 | 180 | 186 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-37 | 2 | 179 | 178 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-41 | 2 | 180 | 179 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 5.0e-45 | 2 | 180 | 180 | + Pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC70505.1 | 0 | 1 | 180 | 170 | 335 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| GenBank | EEE54425.1 | 0 | 1 | 180 | 170 | 354 | hypothetical protein OsJ_01485 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042866.1 | 0 | 1 | 180 | 12 | 196 | Os01g0312500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146685.1 | 0 | 1 | 180 | 165 | 333 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 1 | 180 | 170 | 346 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 8e-27 | 96 | 180 | 1 | 85 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 3e-25 | 93 | 180 | 2 | 89 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FL866690 | 180 | 1 | 180 | 0 |
| CD233100 | 179 | 2 | 180 | 0 |
| HO163228 | 179 | 2 | 180 | 0 |
| DV165548 | 180 | 1 | 180 | 0 |
| DN144034 | 159 | 1 | 159 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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