| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004836m |
| Family | GH28 |
| Protein Properties | Length: 414 Molecular Weight: 42624.7 Isoelectric Point: 6.0758 |
| Chromosome | Chromosome/Scaffold: 5 Start: 29463207 End: 29464699 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 402 | 0 |
| WSAACRSLEPATVYVPHGEFLLSRAAFAGPCSSRVTVQIDGTLVAPSGYTSRGGSGDVWIVFDHVDGLTMSGGTLDGRGPALWACKAAGHGGCPSGATSL TVLNSRDVVIRGLRSVDSELYHVVIDGCERVAVEDVGIVAPGSSPNTDGIHVQASSGVTVTRASIQTGDDCVSVGPGTANLRVEHVSCGPGHGISEQRAI NSLTVRSFDGSRRSIGSLGKESEEAGVENVTVAGASFVGTENGLRIKTWGRAAVEGAYVRGVVFEHAFMHDVRNPIIIDQNYCPNHICPHQSSAVKISDV RYTDIRGSSASQVAVKFDCSATNPCSGIGLRDIKLTLDGGKPAEATCQHADGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MARVNACSLA LLLSCCILSG AAEAAVYDVA GFGAKPDGRT DSSTAFADAW SAACRSLEPA 60 TVYVPHGEFL LSRAAFAGPC SSRVTVQIDG TLVAPSGYTS RGGSGDVWIV FDHVDGLTMS 120 GGTLDGRGPA LWACKAAGHG GCPSGATSLT VLNSRDVVIR GLRSVDSELY HVVIDGCERV 180 AVEDVGIVAP GSSPNTDGIH VQASSGVTVT RASIQTGDDC VSVGPGTANL RVEHVSCGPG 240 HGISEQRAIN SLTVRSFDGS RRSIGSLGKE SEEAGVENVT VAGASFVGTE NGLRIKTWGR 300 AAVEGAYVRG VVFEHAFMHD VRNPIIIDQN YCPNHICPHQ SSAVKISDVR YTDIRGSSAS 360 QVAVKFDCSA TNPCSGIGLR DIKLTLDGGK PAEATCQHAD GKASGYVEPP SCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-84 | 27 | 404 | 384 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-89 | 29 | 409 | 389 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-95 | 27 | 412 | 395 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 3.0e-97 | 26 | 413 | 394 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-130 | 26 | 413 | 389 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB21092.1 | 0 | 1 | 413 | 1 | 400 | polygalacturonase precursor-like [Oryza sativa Japonica Group] |
| GenBank | EAY75017.1 | 0 | 1 | 413 | 1 | 400 | hypothetical protein OsI_02915 [Oryza sativa Indica Group] |
| RefSeq | NP_001043617.1 | 0 | 1 | 413 | 19 | 418 | Os01g0623600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002458187.1 | 0 | 1 | 413 | 1 | 404 | hypothetical protein SORBIDRAFT_03g028380 [Sorghum bicolor] |
| RefSeq | XP_002529091.1 | 0 | 1 | 413 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-16 | 122 | 387 | 117 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000000000007 | 120 | 392 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000007 | 120 | 392 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000007 | 120 | 392 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000007 | 120 | 392 | 76 | 325 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
