| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004860m |
| Family | GH28 |
| Protein Properties | Length: 426 Molecular Weight: 43665.6 Isoelectric Point: 6.4874 |
| Chromosome | Chromosome/Scaffold: 5 Start: 22709775 End: 22711234 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 83 | 413 | 0 |
| TSACGATGSATVLIPKGDYLVGPLNFTGPCKGAITIQLDGTLLGSNDLARYTASWIEVCHVENIVITGPGTLDGQGTGLYTKSKTDCKALPNTLVLYHVT NGTVSGIKLLNSKFFHINIDTSKDITVKDVSITAPADAENTDGVHVGSSSTVSITNATIGTGDDCVSIGPGSSGVTVSGIVCGPGQGISVGCLGRYKDEK DVTGVTVRDCVLKRTTNGVRIKSYEDAESVLTASNLTFENIKMEEVANPIIIDQYYCPEKVCPGKRSNSSMVSVKDVKFRNITGTSSTPEAVSLLCSEKQ PCSGVELIDVNVEYASKNNKTMAVCSNAKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 426 Download |
| MASKNNALRV FLILTVVCAV CAAKKGGAKK DEAAAAAPAP GGAAAPEGAA KATGAEGTFD 60 ISKLGATGDG KTDSTKALQD AWTSACGATG SATVLIPKGD YLVGPLNFTG PCKGAITIQL 120 DGTLLGSNDL ARYTASWIEV CHVENIVITG PGTLDGQGTG LYTKSKTDCK ALPNTLVLYH 180 VTNGTVSGIK LLNSKFFHIN IDTSKDITVK DVSITAPADA ENTDGVHVGS SSTVSITNAT 240 IGTGDDCVSI GPGSSGVTVS GIVCGPGQGI SVGCLGRYKD EKDVTGVTVR DCVLKRTTNG 300 VRIKSYEDAE SVLTASNLTF ENIKMEEVAN PIIIDQYYCP EKVCPGKRSN SSMVSVKDVK 360 FRNITGTSST PEAVSLLCSE KQPCSGVELI DVNVEYASKN NKTMAVCSNA KGTSKGSLEA 420 LACLV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 7.0e-79 | 59 | 424 | 371 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-83 | 58 | 418 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-85 | 59 | 424 | 377 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-103 | 86 | 411 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-120 | 58 | 411 | 360 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG32118.1 | 0 | 1 | 425 | 1 | 415 | exopolygalacturonase precursor [Zea mays] |
| GenBank | ACG34252.1 | 0 | 2 | 425 | 3 | 428 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001130136.1 | 0 | 1 | 425 | 1 | 416 | hypothetical protein LOC100191230 [Zea mays] |
| RefSeq | NP_001141594.1 | 0 | 2 | 425 | 3 | 428 | hypothetical protein LOC100273711 [Zea mays] |
| RefSeq | XP_002455693.1 | 0 | 1 | 424 | 1 | 412 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-20 | 136 | 398 | 101 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 9e-20 | 42 | 413 | 4 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_B | 1e-17 | 170 | 409 | 101 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ib4_A | 1e-17 | 170 | 409 | 101 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1ia5_A | 1e-17 | 170 | 409 | 101 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
