Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si004863m |
Family | CE8 |
Protein Properties | Length: 388 Molecular Weight: 42181.9 Isoelectric Point: 8.7748 |
Chromosome | Chromosome/Scaffold: 5 Start: 36517292 End: 36520198 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 89 | 381 | 0 |
VVDKNPAFGDFTTIQAAIDSLPAINLVRVVIRVNAGTYTEKVTISAMRAFITLEGAGADSTIVQWGDTADSPTGPKGRPLGTFNSATFAVNAQYFLARNI TFKNTSPVPKPGATGKQAVALRVSADNAAFVGCKFLGAQDTLYDHSGRHYYKECYIEGSVDFIFGNALSLYEDCHVHAIARDYGALTAQNRQSMLEDTGF SFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPNRELTVFYGQYKCTGPGASYAGRVAWSRELTDDEAKPFISLSFIDG |
Full Sequence |
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Protein Sequence Length: 388 Download |
MPMPRARFLA CIAVAVVALL APPCGVAGHS RGMRPGRGGG GSAAPFPANA TRAEMIERQF 60 MEWVRYMGAL RHSTFQHALA RAFPSYSLVV DKNPAFGDFT TIQAAIDSLP AINLVRVVIR 120 VNAGTYTEKV TISAMRAFIT LEGAGADSTI VQWGDTADSP TGPKGRPLGT FNSATFAVNA 180 QYFLARNITF KNTSPVPKPG ATGKQAVALR VSADNAAFVG CKFLGAQDTL YDHSGRHYYK 240 ECYIEGSVDF IFGNALSLYE DCHVHAIARD YGALTAQNRQ SMLEDTGFSF VNCRVTGSGA 300 LYLGRAWGTF SRVVFAYTYM DNIIIPRGWY NWGDPNRELT VFYGQYKCTG PGASYAGRVA 360 WSRELTDDEA KPFISLSFID GTEWVRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 6.0e-118 | 88 | 386 | 307 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-118 | 88 | 385 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-118 | 97 | 386 | 290 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-122 | 69 | 384 | 318 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 49 | 387 | 339 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26093.1 | 0 | 1 | 387 | 1 | 399 | unknown [Zea mays] |
GenBank | ACR36293.1 | 0 | 1 | 387 | 1 | 391 | unknown [Zea mays] |
GenBank | EEC79546.1 | 0 | 7 | 387 | 12 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 387 | 1 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458469.1 | 0 | 1 | 387 | 1 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 97 | 386 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.4013e-45 | 97 | 386 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-29 | 86 | 373 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 5e-19 | 85 | 373 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 5e-19 | 85 | 373 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |