| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si004867m |
| Family | CE8 |
| Protein Properties | Length: 196 Molecular Weight: 20904.1 Isoelectric Point: 9.6717 |
| Chromosome | Chromosome/Scaffold: 5 Start: 23749060 End: 23749779 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 60 | 195 | 1.3e-32 |
| EEFKTVQSAIDAVPAGNTEWIIVHLRSGVHKGKVVIPANKPFTFVRGNGKGRTSITHESASSDNAESVAFAVNADNVVVFGISFRNSVRVGLINDQGIRS VFAMVAGDKVAFYHCAFYSPHHTLYDSAGRHYYESC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 196 Download |
| MARPCLLLPL LLAAAAVLAW APGGALAKSK LAKKSDDIVN GPLLTEKLKA KRTLIVGPDE 60 EFKTVQSAID AVPAGNTEWI IVHLRSGVHK GKVVIPANKP FTFVRGNGKG RTSITHESAS 120 SDNAESVAFA VNADNVVVFG ISFRNSVRVG LINDQGIRSV FAMVAGDKVA FYHCAFYSPH 180 HTLYDSAGRH YYESC* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 6.0e-22 | 61 | 195 | 135 | + putative pectinesterase |
| PLN02634 | PLN02634 | 3.0e-22 | 61 | 195 | 144 | + probable pectinesterase |
| PLN02176 | PLN02176 | 5.0e-24 | 52 | 195 | 147 | + putative pectinesterase |
| PLN02497 | PLN02497 | 1.0e-32 | 62 | 195 | 136 | + probable pectinesterase |
| PLN02480 | PLN02480 | 3.0e-86 | 36 | 195 | 162 | + Probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU23222.1 | 0 | 26 | 195 | 24 | 195 | unknown [Glycine max] |
| GenBank | EAZ26679.1 | 0 | 23 | 195 | 24 | 194 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049912.1 | 0 | 23 | 195 | 24 | 194 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146436.1 | 0 | 36 | 195 | 36 | 195 | hypothetical protein LOC100280019 [Zea mays] |
| RefSeq | XP_002457946.1 | 0 | 1 | 195 | 1 | 195 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0.000001 | 61 | 195 | 18 | 150 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.009 | 60 | 195 | 16 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.009 | 60 | 195 | 16 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.009 | 60 | 195 | 16 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_A | 0.009 | 60 | 195 | 16 | 168 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
