Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si004903m |
Family | CE8 |
Protein Properties | Length: 328 Molecular Weight: 35252.6 Isoelectric Point: 4.9696 |
Chromosome | Chromosome/Scaffold: 5 Start: 2715002 End: 2716393 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 34 | 316 | 0 |
IFVNRNGGADFKSVQHAVDSVPFGNYQWIRVHVAAGVYNEKVMIPQNKSFILLEGEGRQQTSIEWADHASNDTSTAASPTFAAYSTDFMARDITFKNTYV VDGGITPAVAALVFGDRSSFYRCGFVGVQDTLSDMDGRHYYEACYIEGAMDFIWGNGQSMFQGCEIWTAPAPVSPGFITAQGRTSEDDAGGFVFRGCTVR GVTPAYLGRAWRGYARVIFYQTDMSGVVVGQGWDAWNYKGKEDTLTMVEAGCTGQGSNRTERVPWTKALGGVELAKFVDVSYV |
Full Sequence |
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Protein Sequence Length: 328 Download |
MALAVAALAV LASMAAVPRG CCDAAAAGTV VRSIFVNRNG GADFKSVQHA VDSVPFGNYQ 60 WIRVHVAAGV YNEKVMIPQN KSFILLEGEG RQQTSIEWAD HASNDTSTAA SPTFAAYSTD 120 FMARDITFKN TYVVDGGITP AVAALVFGDR SSFYRCGFVG VQDTLSDMDG RHYYEACYIE 180 GAMDFIWGNG QSMFQGCEIW TAPAPVSPGF ITAQGRTSED DAGGFVFRGC TVRGVTPAYL 240 GRAWRGYARV IFYQTDMSGV VVGQGWDAWN YKGKEDTLTM VEAGCTGQGS NRTERVPWTK 300 ALGGVELAKF VDVSYVSGDG WLDAQPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-78 | 34 | 322 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-82 | 24 | 322 | 309 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-91 | 32 | 324 | 298 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-98 | 25 | 326 | 310 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-117 | 28 | 326 | 307 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 32 | 326 | 43 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 22 | 327 | 28 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002263748.1 | 0 | 28 | 326 | 26 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 34 | 326 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002455508.1 | 0 | 13 | 327 | 24 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 27 | 324 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-33 | 30 | 322 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000000001 | 41 | 275 | 15 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000001 | 41 | 275 | 15 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000000001 | 41 | 275 | 15 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |