| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si005178m |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 41387.1 Isoelectric Point: 8.84 |
| Chromosome | Chromosome/Scaffold: 5 Start: 43460763 End: 43462465 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 390 | 0 |
| ADACRSTRPATVYVPPGRFLVSSATFTGPCHGHAAVTFAVAGTLVAPAGAGGRGLSGRWITFENMEGLVVSGGTFDGRGRALWACRARGGNCPTPASSLT IANSRDVVVAGVRSVDSELFHVVVLQCVGVTVRGVTVEAPADSPNTDGIHIHMSSHVSVYDARIGTGDDCISVGPGNSHLWIERVACGPGHGISIGSLGK QEGMAVEAVQNVTVKTTWFAGTTNGLRIKTWGGSKRGFVRGVTFADATMSGVDNPIIIDQRYCPSGSGCPGGSSSIRISDVRYVGIRGSSATPVAVNFDC SRSNPCSGIRLQDVALTYRSRPAAAKSYCRNVQGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MAMAKSVLSL LAHLHAAVLF LPADPAAGAA MYNVLRYGAR PDGAADAAGA FLRAWADACR 60 STRPATVYVP PGRFLVSSAT FTGPCHGHAA VTFAVAGTLV APAGAGGRGL SGRWITFENM 120 EGLVVSGGTF DGRGRALWAC RARGGNCPTP ASSLTIANSR DVVVAGVRSV DSELFHVVVL 180 QCVGVTVRGV TVEAPADSPN TDGIHIHMSS HVSVYDARIG TGDDCISVGP GNSHLWIERV 240 ACGPGHGISI GSLGKQEGMA VEAVQNVTVK TTWFAGTTNG LRIKTWGGSK RGFVRGVTFA 300 DATMSGVDNP IIIDQRYCPS GSGCPGGSSS IRISDVRYVG IRGSSATPVA VNFDCSRSNP 360 CSGIRLQDVA LTYRSRPAAA KSYCRNVQGS TLGLVLPPSC L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-65 | 59 | 397 | 347 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-80 | 59 | 387 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-80 | 59 | 401 | 350 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-94 | 59 | 400 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-98 | 59 | 401 | 343 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36955.1 | 0 | 120 | 401 | 1 | 285 | unknown [Zea mays] |
| GenBank | EAZ14447.1 | 0 | 3 | 401 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045053.1 | 0 | 3 | 401 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141204.1 | 0 | 1 | 401 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
| RefSeq | XP_002456767.1 | 0 | 1 | 401 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-18 | 154 | 375 | 154 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 124 | 344 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 124 | 344 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 124 | 344 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 124 | 344 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
