y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si005458m |
Family | CE8 |
Protein Properties | Length: 253 Molecular Weight: 27560.9 Isoelectric Point: 6.5085 |
Chromosome | Chromosome/Scaffold: 5 Start: 42970856 End: 42973085 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 2 | 245 | 0 |
GKTVITGDLNADTPGVSTFNTATVGVLADGFMARDLTISNTAGPDAHQAVAFRSTGDRTVLDTVELLGHQDTLYAHAMRHLYTRCRVSGTVDFVFGNSAA VLHDTALVVLPRQLRPEKGENDAVTAQGRTDPAQPTGIVLSRCAVNGSDEYMALYRQKPDVHRVYLGRPWKEYSRTVYLGCTLAEIVQPQGWMAWNGDFA LRTLYYGEFDSAGPGGAASRRVAWSSQVPREHVDAYSVDNFIQG |
Full Sequence |
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Protein Sequence Length: 253 Download |
MGKTVITGDL NADTPGVSTF NTATVGVLAD GFMARDLTIS NTAGPDAHQA VAFRSTGDRT 60 VLDTVELLGH QDTLYAHAMR HLYTRCRVSG TVDFVFGNSA AVLHDTALVV LPRQLRPEKG 120 ENDAVTAQGR TDPAQPTGIV LSRCAVNGSD EYMALYRQKP DVHRVYLGRP WKEYSRTVYL 180 GCTLAEIVQP QGWMAWNGDF ALRTLYYGEF DSAGPGGAAS RRVAWSSQVP REHVDAYSVD 240 NFIQGHEWIP KA* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 9.0e-76 | 3 | 250 | 250 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 3.0e-77 | 1 | 249 | 252 | + pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 8.0e-80 | 1 | 251 | 257 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-107 | 1 | 245 | 248 | + Pectinesterase. | ||
PLN02708 | PLN02708 | 0 | 1 | 251 | 251 | + Probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35661.1 | 0 | 1 | 251 | 1 | 251 | unknown [Zea mays] |
GenBank | EAY76707.1 | 0 | 1 | 251 | 286 | 538 | hypothetical protein OsI_04662 [Oryza sativa Indica Group] |
RefSeq | NP_001044992.1 | 0 | 1 | 251 | 286 | 538 | Os01g0880300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002306241.1 | 0 | 1 | 252 | 306 | 557 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002458861.1 | 0 | 26 | 251 | 279 | 505 | hypothetical protein SORBIDRAFT_03g041680 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 1 | 249 | 62 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 4 | 249 | 69 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 0.00000000000006 | 10 | 221 | 76 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000006 | 10 | 221 | 76 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.0000000000001 | 10 | 171 | 76 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EC888853 | 253 | 1 | 253 | 0 |
EE289607 | 223 | 1 | 223 | 0 |
FL783873 | 231 | 1 | 231 | 0 |
FL694761 | 238 | 16 | 253 | 0 |
EE028688 | 222 | 32 | 253 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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