| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006038m |
| Family | GT5 |
| Protein Properties | Length: 643 Molecular Weight: 71079.6 Isoelectric Point: 5.6235 |
| Chromosome | Chromosome/Scaffold: 4 Start: 5031167 End: 5038357 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 136 | 632 | 0 |
| IVFVTGEASPYAKSGGLGDVCGSLPVALAARGHRVMVVMPRYLNGTSDKNYANAFYTEKRIRIPCFGGTHEVTFFHEYRDSVDWVFVDHPSYHRPGNIYG DKFGAYGDNQFRYTLLCYAACEAPLVLELGGYIYGQNCMFVVNDWHASLVPVLLAAKYRPYGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGAL EWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLDELLSSRKSVLNGIVNGIDINDWNPATDKHIPCHYSADDLSGKAKCKA ELQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLIMPDLMREDIQFAMLGSGDPELEDWMRSTESNFRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEP CGLNQLYAMQYGTVPVVHATGGLRDTVENFNPFGDNGEQGTGWAFAPLTTENMLWTLRTAISTYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 643 Download |
| MATPAVGAAC LLLARAAGPG PRRGSGGGGD QARPRRLQRA VRRRCVAELS REGPAPRPMP 60 PQLAPPHVPG FLEPPRDPEP ASTPPPVPED DLGDLDLDLE GIAEDSINDT VVVASEEDLT 120 IMVGKEQARA KITQSIVFVT GEASPYAKSG GLGDVCGSLP VALAARGHRV MVVMPRYLNG 180 TSDKNYANAF YTEKRIRIPC FGGTHEVTFF HEYRDSVDWV FVDHPSYHRP GNIYGDKFGA 240 YGDNQFRYTL LCYAACEAPL VLELGGYIYG QNCMFVVNDW HASLVPVLLA AKYRPYGVYK 300 DSRSILVIHN LAHQGVEPAS TYPDLGLPPE WYGALEWVFP EWARRHALDK GEAVNFLKGA 360 VVTADRIVTV SKGYSWEVTT AEGGQGLDEL LSSRKSVLNG IVNGIDINDW NPATDKHIPC 420 HYSADDLSGK AKCKAELQKE LGLPIRPDVP LIGFIGRLDY QKGIDLIKLI MPDLMREDIQ 480 FAMLGSGDPE LEDWMRSTES NFRDKFRGWV GFSVPVSHRI TAGCDILLMP SRFEPCGLNQ 540 LYAMQYGTVP VVHATGGLRD TVENFNPFGD NGEQGTGWAF APLTTENMLW TLRTAISTYR 600 EHKSSWEGLM KRGMSKDFTW DHAAEQYEQI FQWAFIDQPY VR* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-106 | 135 | 632 | 509 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-146 | 136 | 634 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 136 | 633 | 498 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 136 | 632 | 498 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 0 | 136 | 632 | 504 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF03557.1 | 0 | 46 | 641 | 45 | 646 | starch synthase I [Aegilops tauschii] |
| EMBL | CAB99209.1 | 0 | 46 | 641 | 45 | 646 | starch synthase I-1 [Triticum aestivum] |
| GenBank | EAZ35910.1 | 0 | 1 | 641 | 1 | 640 | hypothetical protein OsJ_20213 [Oryza sativa Japonica Group] |
| RefSeq | NP_001104892.1 | 0 | 29 | 641 | 24 | 639 | plastid starch synthase I precursor [Zea mays] |
| Swiss-Prot | Q43654 | 0 | 46 | 641 | 45 | 646 | SSY1_WHEAT RecName: Full=Starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Starch synthase I-2; Short=SS I-2; Short=SS I; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 135 | 631 | 11 | 508 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 3vue_A | 0 | 135 | 631 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 135 | 631 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 135 | 631 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 135 | 631 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO595058 | 491 | 151 | 640 | 0 |
| GO872237 | 346 | 294 | 639 | 0 |
| GO885224 | 352 | 104 | 455 | 0 |
| GO885136 | 336 | 104 | 439 | 0 |
| GO842198 | 335 | 158 | 492 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
