| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006097m |
| Family | CBM57 |
| Protein Properties | Length: 611 Molecular Weight: 67066.4 Isoelectric Point: 7.0959 |
| Chromosome | Chromosome/Scaffold: 4 Start: 4387051 End: 4399157 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 368 | 535 | 5.2e-30 |
| FAINCGGKQMDYSDPMPTMFSEDSADLGGAGFHINTTSHWVVSHVGSDPFNKTSGIVNTSNILETNMPELYKTARTSTSSLRYYVVGLANGKYTVQLFFA EIVITDGPGRRLFDIDMQDQNIRKDFDITKEAGGPRKATNITQEVTVDNSMLVIHLYWSGRGTCCIPY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 611 Download |
| MARRPAPALV AVSLLVLALL NLDAARGQPL PPTNSSDAAA LHAVFRQWRL EGDTAGVVDP 60 CLMPVLSESS MMNASIDCDC SRGDECRITH LNVTGYRNIT EIPPALFNLT ELVSLDLSNN 120 NLSGSIPPGV GNLSKLETWH FNNNHLNGSF PRELSLLRNL QSLWMFDNYI EGSIPEFIQN 180 LTNLTDLRIY GMKLQGPIPN FFSNLINLEH LMLGDLEGKH SSFDFIANWA NLSTLSLRKC 240 GLTTQLPNTL PTLPKLKYLD LRSNNLSGAI RLLLPYKNSE YIYVGENNFS GPLPAEFVRP 300 SVPLDVSYNP SVNGRLPNKP AGQNWLINYI GTSIDTSGTI DSADLTTLNC LHMKECNRTN 360 LTNPATSFAI NCGGKQMDYS DPMPTMFSED SADLGGAGFH INTTSHWVVS HVGSDPFNKT 420 SGIVNTSNIL ETNMPELYKT ARTSTSSLRY YVVGLANGKY TVQLFFAEIV ITDGPGRRLF 480 DIDMQDQNIR KDFDITKEAG GPRKATNITQ EVTVDNSMLV IHLYWSGRGT CCIPYKGAYG 540 PLVSAIKVTR SHDRKISPPQ APSSDSARQD EKRRGVIAGI AALCIAAAVI SSSVVYLWWK 600 WVSLVKRSMA * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 3.0e-9 | 102 | 317 | 220 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-9 | 87 | 317 | 236 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-13 | 101 | 317 | 220 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 8.0e-17 | 95 | 316 | 236 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 2.0e-46 | 366 | 546 | 184 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21051.1 | 0 | 8 | 546 | 2 | 587 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC80088.1 | 0 | 29 | 610 | 31 | 607 | hypothetical protein OsI_21825 [Oryza sativa Indica Group] |
| RefSeq | NP_001056921.1 | 0 | 31 | 610 | 103 | 680 | Os06g0167500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002436559.1 | 0 | 28 | 610 | 28 | 564 | hypothetical protein SORBIDRAFT_10g004730 [Sorghum bicolor] |
| RefSeq | XP_002515504.1 | 0 | 31 | 579 | 266 | 857 | ATP binding protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 0.0000000000001 | 101 | 270 | 406 | 551 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3rj0_A | 0.00000002 | 75 | 317 | 188 | 432 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3rj0_A | 0.00000002 | 86 | 199 | 610 | 718 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3rj0_A | 0.0000003 | 101 | 317 | 478 | 694 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3rj0_A | 0.00005 | 102 | 179 | 645 | 722 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
