| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006174m |
| Family | GH35 |
| Protein Properties | Length: 554 Molecular Weight: 61325.9 Isoelectric Point: 9.1436 |
| Chromosome | Chromosome/Scaffold: 4 Start: 35604624 End: 35608496 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 279 | 374 | 2.2e-40 |
| NSNSKPTMWTEAWSGWFTAFGKPVPHRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFDRTSGGPFIATSYDYDAPIDEYGLLRQPKWGHLRDLHK | |||
| GH35 | 37 | 128 | 0 |
| TINGQRRVLISGSIHYPRSTPEMWPDLLQKAKDGGLDVVQTYVFWNGHEPVQGQYYFGDRYDLVRFVKLAKQAGLLVHLRIGPYVCAEWNFG | |||
| Full Sequence |
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| Protein Sequence Length: 554 Download |
| MSGGALLVAL LAAAAVIIVS SPAPANAAVS YDHRAVTING QRRVLISGSI HYPRSTPEMW 60 PDLLQKAKDG GLDVVQTYVF WNGHEPVQGQ YYFGDRYDLV RFVKLAKQAG LLVHLRIGPY 120 VCAEWNFGWV RHRHHHPWNS CCFKNCSLTS SSFRHGIHGC LLQWVPRVAQ VRPRHQLPDG 180 QRAVQGGDAG VRGEDRVDDE GGGALRVAGR AHHPGAGGER VRAHGVRHGR RRPALRQLGS 240 QDGRRHRRPR ALGHVQADDA PDPVINTCNG FYCDYFTPNS NSKPTMWTEA WSGWFTAFGK 300 PVPHRPVEDL AFAVARFIQK GGSFVNYYMY HGGTNFDRTS GGPFIATSYD YDAPIDEYGL 360 LRQPKWGHLR DLHKAIKQAE PALVSGDPTV QSIGNYEKAY VFKSSGGACA AFLSNYKTNA 420 PATVVFNGRR YELPAWSISV LPDCKTAVFN TATVKEPSAP ATMSPAGGFS WRSYSEATNS 480 LDDRAFTKDG LVEQLSMTWD KSDYLWYTTY VNIDSSEQFL KSGKWPQLTI YSAGHALQVF 540 VNGQSYGTDD WIF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 7.0e-13 | 31 | 125 | 97 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 5.0e-52 | 256 | 376 | 132 | + Glycosyl hydrolases family 35. | ||
| pfam01301 | Glyco_hydro_35 | 6.0e-53 | 38 | 128 | 91 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 2.0e-55 | 31 | 132 | 106 | + beta-galactosidase; Provisional | ||
| PLN03059 | PLN03059 | 4.0e-139 | 256 | 548 | 295 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG30563.1 | 0 | 26 | 547 | 25 | 511 | beta-galactosidase precursor [Zea mays] |
| GenBank | EAZ01416.1 | 0 | 32 | 547 | 27 | 507 | hypothetical protein OsI_23450 [Oryza sativa Indica Group] |
| GenBank | EEE65914.1 | 0 | 32 | 547 | 25 | 505 | hypothetical protein OsJ_21762 [Oryza sativa Japonica Group] |
| RefSeq | NP_001130532.1 | 0 | 26 | 547 | 25 | 511 | hypothetical protein LOC100191631 [Zea mays] |
| RefSeq | XP_002437187.1 | 0 | 27 | 547 | 29 | 514 | hypothetical protein SORBIDRAFT_10g022620 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-29 | 38 | 372 | 17 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 9e-28 | 38 | 359 | 12 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 9e-28 | 38 | 359 | 12 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8c_B | 9e-28 | 38 | 359 | 12 | 313 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| PDB | 4e8c_A | 9e-28 | 38 | 359 | 12 | 313 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 7 | 29 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 27 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CO452768 | 244 | 304 | 547 | 0 |
| FL862053 | 242 | 265 | 505 | 0 |
| FL867328 | 245 | 304 | 547 | 0 |
| FL871807 | 238 | 311 | 547 | 0 |
| FL787875 | 220 | 270 | 488 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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